JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC6A14_chrX_116431606_116466458	0/0	t0002	2608	84	8	16	52	3	5	copy fasta	SLC6A14	chrX	116431606	116466458
SLC6A14_chrX_116431606_116466458	0/0	t0003	2610	29	27	1	0	0	1	copy fasta	SLC6A14	chrX	116431606	116466458
SLC6A14_chrX_116431606_116466458	0/0	t0004	2609	22	4	5	7	5	1	copy fasta	SLC6A14	chrX	116431606	116466458
SLC6A14_chrX_116431606_116466458	0/0	t0005	2613	9	0	1	3	0	5	copy fasta	SLC6A14	chrX	116431606	116466458
SLC6A14_chrX_116431606_116466458	0/0	t0006	2609	8	7	1	0	0	0	copy fasta	SLC6A14	chrX	116431606	116466458
SLC6A14_chrX_116431606_116466458	0/0	t0007	2613	6	6	0	0	0	0	copy fasta	SLC6A14	chrX	116431606	116466458
SLC6A14_chrX_116431606_116466458	1/0	t0008	2608	6	4	1	0	0	0	copy fasta	SLC6A14	chrX	116431606	116466458
SLC6A14_chrX_116431606_116466458	0/0	t0009	2609	4	1	3	0	0	0	copy fasta	SLC6A14	chrX	116431606	116466458
SLC6A14_chrX_116431606_116466458	0/0	t0010	2609	4	2	0	2	0	0	copy fasta	SLC6A14	chrX	116431606	116466458
SLC6A14_chrX_116431606_116466458	0/0	t0011	2609	3	2	1	0	0	0	copy fasta	SLC6A14	chrX	116431606	116466458
SLC6A14_chrX_116431606_116466458	0/0	t0012	2609	3	0	2	0	1	0	copy fasta	SLC6A14	chrX	116431606	116466458
SLC6A14_chrX_116431606_116466458	0/0	t0013	2613	2	2	0	0	0	0	copy fasta	SLC6A14	chrX	116431606	116466458
SLC6A14_chrX_116431606_116466458	0/0	t0014	2609	2	0	0	0	0	2	copy fasta	SLC6A14	chrX	116431606	116466458
SLC6A14_chrX_116431606_116466458	0/0	t0015	2607	2	0	1	0	0	1	copy fasta	SLC6A14	chrX	116431606	116466458
SLC6A14_chrX_116431606_116466458	0/0	t0016	2613	1	1	0	0	0	0	copy fasta	SLC6A14	chrX	116431606	116466458
SLC6A14_chrX_116431606_116466458	0/0	t0017	2609	1	1	0	0	0	0	copy fasta	SLC6A14	chrX	116431606	116466458
SLC6A14_chrX_116431606_116466458	0/0	t0018	2609	1	0	0	0	0	1	copy fasta	SLC6A14	chrX	116431606	116466458
SLC6A14_chrX_116431606_116466458	0/0	t0019	2602	1	1	0	0	0	0	copy fasta	SLC6A14	chrX	116431606	116466458
SLC6A14_chrX_116431606_116466458	0/0	t0020	2609	1	0	1	0	0	0	copy fasta	SLC6A14	chrX	116431606	116466458
SLC6A14_chrX_116431606_116466458	0/0	t0021	2610	1	1	0	0	0	0	copy fasta	SLC6A14	chrX	116431606	116466458
SLC6A14_chrX_116431606_116466458	0/0	t0022	2609	1	0	0	0	0	1	copy fasta	SLC6A14	chrX	116431606	116466458
SLC6A14_chrX_116431606_116466458	0/0	t0023	2609	1	0	1	0	0	0	copy fasta	SLC6A14	chrX	116431606	116466458
SLC6A14_chrX_116431606_116466458	0/0	t0024	2609	1	1	0	0	0	0	copy fasta	SLC6A14	chrX	116431606	116466458
SLC6A14_chrX_116431606_116466458	0/0	t0025	2609	1	0	0	0	0	1	copy fasta	SLC6A14	chrX	116431606	116466458
SLC6A14_chrX_116431606_116466458	0/0	t0026	2604	1	0	0	1	0	0	copy fasta	SLC6A14	chrX	116431606	116466458
SLC6A15_chr12_84854491_84917799	1/0	t0001	2607	78	15	21	21	7	13	copy fasta	SLC6A15	chr12	84854491	84917799
SLC6A15_chr12_84854491_84917799	0/1	t0002	2608	53	22	21	0	7	2	copy fasta	SLC6A15	chr12	84854491	84917799
SLC6A15_chr12_84854491_84917799	0/0	t0003	2606	35	13	5	4	2	11	copy fasta	SLC6A15	chr12	84854491	84917799
SLC6A15_chr12_84854491_84917799	0/0	t0004	2605	15	13	1	1	0	0	copy fasta	SLC6A15	chr12	84854491	84917799
SLC6A15_chr12_84854491_84917799	0/0	t0005	2607	10	7	0	3	0	0	copy fasta	SLC6A15	chr12	84854491	84917799
SLC6A15_chr12_84854491_84917799	0/0	t0006	2608	4	3	1	0	0	0	copy fasta	SLC6A15	chr12	84854491	84917799
SLC6A15_chr12_84854491_84917799	0/0	t0007	2609	4	3	0	0	0	1	copy fasta	SLC6A15	chr12	84854491	84917799
SLC6A15_chr12_84854491_84917799	0/0	t0008	2609	2	2	0	0	0	0	copy fasta	SLC6A15	chr12	84854491	84917799
SLC6A15_chr12_84854491_84917799	0/0	t0009	2607	1	0	1	0	0	0	copy fasta	SLC6A15	chr12	84854491	84917799
SLC6A15_chr12_84854491_84917799	0/0	t0010	2607	1	1	0	0	0	0	copy fasta	SLC6A15	chr12	84854491	84917799
SLC6A15_chr12_84854491_84917799	0/0	t0011	2606	1	0	0	0	0	1	copy fasta	SLC6A15	chr12	84854491	84917799
SLC6A15_chr12_84854491_84917799	0/0	t0012	2606	1	1	0	0	0	0	copy fasta	SLC6A15	chr12	84854491	84917799
SLC6A15_chr12_84854491_84917799	0/0	t0013	2606	1	0	1	0	0	0	copy fasta	SLC6A15	chr12	84854491	84917799
SLC6A15_chr12_84854491_84917799	0/0	t0014	2607	1	0	0	0	0	1	copy fasta	SLC6A15	chr12	84854491	84917799
SLC6A15_chr12_84854491_84917799	0/0	t0015	2607	1	0	0	0	0	1	copy fasta	SLC6A15	chr12	84854491	84917799
SLC6A15_chr12_84854491_84917799	0/0	t0016	2607	1	0	0	1	0	0	copy fasta	SLC6A15	chr12	84854491	84917799
SLC6A15_chr12_84854491_84917799	0/0	t0017	2607	1	0	0	1	0	0	copy fasta	SLC6A15	chr12	84854491	84917799
SLC6A15_chr12_84854491_84917799	0/0	t0018	2606	1	1	0	0	0	0	copy fasta	SLC6A15	chr12	84854491	84917799
SLC6A15_chr12_84854491_84917799	0/0	t0019	2607	1	0	0	1	0	0	copy fasta	SLC6A15	chr12	84854491	84917799
SLC6A15_chr12_84854491_84917799	0/0	t0020	2607	1	0	0	1	0	0	copy fasta	SLC6A15	chr12	84854491	84917799
SLC6A15_chr12_84854491_84917799	0/0	t0021	2607	1	1	0	0	0	0	copy fasta	SLC6A15	chr12	84854491	84917799
SLC6A15_chr12_84854491_84917799	0/0	t0022	2608	1	1	0	0	0	0	copy fasta	SLC6A15	chr12	84854491	84917799
SLC6A15_chr12_84854491_84917799	0/0	t0023	2607	1	0	0	1	0	0	copy fasta	SLC6A15	chr12	84854491	84917799
SLC6A15_chr12_84854491_84917799	0/0	t0024	2606	1	0	1	0	0	0	copy fasta	SLC6A15	chr12	84854491	84917799
SLC6A15_chr12_84854491_84917799	0/0	t0025	2607	1	1	0	0	0	0	copy fasta	SLC6A15	chr12	84854491	84917799