JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC6A17_chr1_110145494_110207202	0/0	t0049	4236	1	0	0	1	0	0	copy fasta	SLC6A17	chr1	110145494	110207202
SLC6A17_chr1_110145494_110207202	0/0	t0050	4236	1	0	0	1	0	0	copy fasta	SLC6A17	chr1	110145494	110207202
SLC6A17_chr1_110145494_110207202	0/0	t0051	4236	1	1	0	0	0	0	copy fasta	SLC6A17	chr1	110145494	110207202
SLC6A17_chr1_110145494_110207202	0/0	t0052	4236	1	0	0	0	0	1	copy fasta	SLC6A17	chr1	110145494	110207202
SLC6A17_chr1_110145494_110207202	0/0	t0053	4236	1	0	1	0	0	0	copy fasta	SLC6A17	chr1	110145494	110207202
SLC6A17_chr1_110145494_110207202	0/0	t0054	4236	1	1	0	0	0	0	copy fasta	SLC6A17	chr1	110145494	110207202
SLC6A18_chr5_1220381_1251189	0/1	t0001	209	227	63	43	86	7	27	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	t0002	215	103	15	28	41	3	16	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	1/0	t0003	209	96	11	11	61	6	6	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	t0004	215	29	4	6	16	2	1	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A18_chr5_1220381_1251189	0/0	t0005	209	1	1	0	0	0	0	copy fasta	SLC6A18	chr5	1220381	1251189
SLC6A19_chr5_1196595_1230111	0/0	t0001	3408	76	12	5	47	2	10	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	1/0	t0002	3264	72	0	9	54	2	6	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	t0003	3192	58	2	25	24	1	6	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	t0004	3264	48	23	2	19	0	4	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	t0005	3262	29	2	13	7	2	5	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/1	t0006	3336	24	1	10	4	2	6	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	t0007	3408	20	0	2	18	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	t0008	3264	14	3	5	1	4	1	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	t0009	3264	12	11	1	0	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	t0010	3264	9	0	0	9	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	t0011	3262	8	0	0	7	0	1	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	t0012	3264	8	0	0	8	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	t0013	3264	7	6	1	0	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	t0014	3336	7	6	1	0	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	t0015	3262	7	0	5	1	0	1	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	t0016	3190	7	7	0	0	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	t0017	3264	6	0	0	6	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	t0018	3118	6	0	0	0	0	6	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	t0019	3264	4	3	1	0	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	t0020	3264	4	0	0	4	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	t0021	3408	3	3	0	0	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	t0022	3192	1	0	0	1	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	t0023	3262	1	0	0	0	0	1	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	t0024	3623	1	0	0	1	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	t0025	3264	1	0	0	0	1	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	t0026	3264	1	0	0	1	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	t0027	3408	1	0	1	0	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	t0028	3192	1	0	1	0	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	t0029	3264	1	1	0	0	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	t0030	3192	1	0	0	0	0	1	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	t0031	3192	1	0	0	1	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	t0032	3264	1	0	1	0	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	t0033	3408	1	0	0	1	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	t0034	3408	1	0	0	1	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	t0035	3408	1	0	0	1	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	t0036	3408	1	1	0	0	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	t0037	3264	1	1	0	0	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	t0038	3192	1	1	0	0	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	t0039	3254	1	1	0	0	0	0	copy fasta	SLC6A19	chr5	1196595	1230111