JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC6A19_chr5_1196595_1230111	0/0	t0040	3264	1	1	0	0	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	t0041	3264	1	1	0	0	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	t0042	3406	1	1	0	0	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	t0043	3406	1	1	0	0	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	t0044	3406	1	1	0	0	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	t0045	3190	1	1	0	0	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	t0046	3264	1	1	0	0	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	t0047	3408	1	1	0	0	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	t0048	3264	1	1	0	0	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	t0049	3190	1	0	1	0	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A19_chr5_1196595_1230111	0/0	t0050	3406	1	1	0	0	0	0	copy fasta	SLC6A19	chr5	1196595	1230111
SLC6A1_chr3_10987748_11044247	0/0	t0001	2679	50	24	6	17	0	3	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	t0002	2679	46	10	6	26	0	4	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	t0003	2679	35	5	5	14	2	9	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	t0004	2679	33	4	1	23	0	5	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	t0005	2679	29	1	7	15	1	5	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	t0006	2679	25	8	2	15	0	0	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	t0007	2679	22	10	4	6	0	2	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	t0008	2679	19	2	1	13	2	1	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	t0009	2679	18	0	0	17	1	0	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	t0010	2679	17	0	7	5	2	3	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	t0011	2679	17	1	4	11	1	0	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	t0012	2679	16	0	2	11	2	1	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	t0013	2679	14	0	5	9	0	0	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	t0014	2679	13	0	3	7	0	3	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	t0015	2679	9	0	1	5	1	2	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	t0016	2679	7	7	0	0	0	0	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	t0017	2679	5	0	0	5	0	0	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	t0018	2679	4	0	4	0	0	0	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	t0019	2679	3	1	2	0	0	0	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	t0020	2679	3	1	2	0	0	0	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	t0021	2680	3	3	0	0	0	0	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	t0022	2679	3	3	0	0	0	0	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	t0023	2679	3	0	0	3	0	0	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	t0024	2679	2	2	0	0	0	0	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	t0025	2679	2	0	2	0	0	0	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	t0026	2679	2	2	0	0	0	0	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	t0027	2679	2	0	0	0	0	2	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/1	t0028	2679	1	0	0	0	0	0	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	t0029	2679	1	0	1	0	0	0	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	t0030	2679	1	0	0	1	0	0	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	t0031	2679	1	0	0	1	0	0	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	t0032	2680	1	1	0	0	0	0	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	t0033	2679	1	0	0	0	0	1	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	t0034	2679	1	0	0	1	0	0	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	t0035	2679	1	0	0	1	0	0	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	t0036	2679	1	1	0	0	0	0	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	t0037	2679	1	1	0	0	0	0	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	t0038	2679	1	1	0	0	0	0	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	t0039	2679	1	0	0	0	0	1	copy fasta	SLC6A1	chr3	10987748	11044247