JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC6A1_chr3_10987748_11044247	0/0	t0040	2679	1	1	0	0	0	0	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	t0041	2680	1	1	0	0	0	0	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	t0042	2680	1	1	0	0	0	0	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	t0043	2679	1	0	0	1	0	0	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	t0044	2679	1	0	0	1	0	0	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	t0045	2679	1	0	0	1	0	0	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	t0046	2679	1	0	0	0	0	1	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	t0047	2679	1	1	0	0	0	0	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	t0048	2679	1	0	0	1	0	0	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	t0049	2679	1	0	0	0	0	1	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	t0050	2679	1	1	0	0	0	0	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	t0051	2679	1	0	0	0	0	1	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	t0052	2679	1	1	0	0	0	0	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	t0053	2679	1	1	0	0	0	0	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	t0054	2679	1	1	0	0	0	0	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	t0055	2679	1	0	1	0	0	0	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	t0056	2679	1	1	0	0	0	0	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	t0057	2679	1	0	0	0	0	1	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	t0058	2679	1	0	0	1	0	0	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	t0059	2679	1	0	0	1	0	0	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	t0060	2679	1	1	0	0	0	0	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	1/0	t0061	2679	1	0	0	0	0	0	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	t0062	2679	1	0	0	1	0	0	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A1_chr3_10987748_11044247	0/0	t0063	2679	1	0	0	1	0	0	copy fasta	SLC6A1	chr3	10987748	11044247
SLC6A20_chr3_45750449_45801536	0/0	t0001	3647	95	6	18	51	2	18	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	t0002	3646	31	10	7	11	2	1	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	t0003	3645	30	0	0	26	1	3	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	t0004	3644	28	6	11	5	3	3	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	t0005	3644	24	13	8	1	1	1	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	t0006	3644	22	19	3	0	0	0	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	t0007	3647	18	0	1	14	2	1	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	t0008	3646	14	1	1	10	0	2	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	1/0	t0009	3647	11	0	1	7	0	2	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	t0010	3644	8	1	1	3	1	2	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	t0011	3647	7	2	1	3	0	1	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/1	t0012	3645	6	0	2	2	1	0	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	t0013	3643	6	4	2	0	0	0	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	t0014	3646	6	0	0	5	0	1	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	t0015	3645	5	1	2	0	1	1	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	t0016	3645	5	2	1	2	0	0	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	t0017	3645	4	4	0	0	0	0	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	t0018	3644	4	1	3	0	0	0	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	t0019	3646	3	1	1	0	0	1	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	t0020	3643	3	3	0	0	0	0	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	t0021	3647	3	3	0	0	0	0	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	t0022	3647	3	0	0	3	0	0	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	t0023	3643	3	2	1	0	0	0	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	t0024	3647	3	3	0	0	0	0	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	t0025	3647	3	0	0	3	0	0	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	t0026	3645	2	0	2	0	0	0	copy fasta	SLC6A20	chr3	45750449	45801536