JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC6A20_chr3_45750449_45801536	0/0	t0027	3647	2	0	1	1	0	0	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	t0028	3647	2	0	1	0	0	1	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	t0029	3649	2	0	0	2	0	0	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	t0030	3647	2	0	2	0	0	0	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	t0031	3644	2	2	0	0	0	0	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	t0032	3644	2	2	0	0	0	0	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	t0033	3645	2	0	0	1	0	1	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	t0034	3647	2	0	0	2	0	0	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	t0035	3645	2	0	0	2	0	0	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	t0036	3645	2	0	0	2	0	0	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	t0037	3645	1	0	1	0	0	0	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	t0038	3647	1	0	1	0	0	0	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	t0039	3647	1	0	1	0	0	0	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	t0040	3647	1	0	0	1	0	0	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	t0041	3646	1	0	0	1	0	0	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	t0042	3645	1	0	0	1	0	0	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	t0043	3646	1	0	0	1	0	0	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	t0044	3647	1	0	0	1	0	0	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	t0045	3647	1	0	0	0	0	1	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	t0046	3645	1	0	1	0	0	0	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	t0047	3645	1	0	0	0	0	1	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	t0048	3644	1	0	0	0	1	0	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	t0049	3644	1	1	0	0	0	0	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	t0050	3647	1	0	0	0	0	1	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	t0051	3647	1	0	1	0	0	0	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	t0052	3647	1	0	0	0	1	0	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	t0053	3647	1	0	0	0	0	1	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	t0054	3647	1	0	0	1	0	0	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	t0055	3644	1	1	0	0	0	0	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	t0056	3644	1	1	0	0	0	0	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	t0057	3644	1	1	0	0	0	0	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	t0058	3646	1	0	0	1	0	0	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	t0059	3649	1	0	0	1	0	0	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	t0060	3647	1	0	0	1	0	0	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	t0061	3647	1	0	0	1	0	0	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	t0062	3646	1	0	0	1	0	0	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	t0063	3646	1	0	0	1	0	0	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	t0064	3647	1	0	1	0	0	0	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	t0065	3647	1	0	0	1	0	0	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	t0066	3646	1	0	0	1	0	0	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A20_chr3_45750449_45801536	0/0	t0067	3647	1	0	0	0	0	1	copy fasta	SLC6A20	chr3	45750449	45801536
SLC6A2_chr16_55650988_55711192	0/0	t0001	4081	179	13	47	90	8	21	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0002	4081	35	3	3	24	2	3	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0003	4070	30	3	5	19	0	3	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0004	4081	22	12	2	5	2	1	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0005	4071	9	0	1	7	0	1	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0006	4080	9	0	5	0	0	4	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0007	4079	9	9	0	0	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0008	4081	8	0	4	0	1	3	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0009	4070	6	0	0	6	0	0	copy fasta	SLC6A2	chr16	55650988	55711192