JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC6A2_chr16_55650988_55711192	0/0	t0010	4072	4	4	0	0	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0011	4081	4	0	0	4	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0012	4074	3	3	0	0	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0013	4074	3	3	0	0	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0014	4083	3	3	0	0	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0015	4082	3	0	0	2	0	1	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0016	4081	3	0	2	0	0	1	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0017	4081	2	2	0	0	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0018	4081	2	0	0	2	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0019	4072	2	2	0	0	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0020	4081	2	0	0	1	0	1	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0021	4081	2	0	0	2	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0022	4081	2	0	0	2	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	1/0	t0023	4080	2	1	0	0	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0024	4081	2	0	0	2	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0025	4081	2	2	0	0	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0026	4080	2	2	0	0	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0027	4081	2	2	0	0	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0028	4082	1	1	0	0	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0029	4079	1	1	0	0	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0030	4079	1	1	0	0	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0031	4081	1	0	0	0	0	1	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0032	4081	1	0	0	1	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0033	4081	1	1	0	0	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0034	4075	1	1	0	0	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0035	4080	1	0	0	1	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0036	4083	1	0	0	1	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0037	4075	1	1	0	0	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0038	4075	1	1	0	0	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0039	4071	1	0	0	1	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0040	4070	1	1	0	0	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0041	4082	1	0	0	1	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0042	4080	1	0	1	0	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0043	4075	1	1	0	0	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0044	4076	1	0	1	0	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0045	4080	1	1	0	0	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0046	4084	1	1	0	0	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0047	4080	1	1	0	0	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0048	4082	1	0	0	0	0	1	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0049	4082	1	0	0	1	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0050	4082	1	0	0	1	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0051	4077	1	1	0	0	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0052	4081	1	0	0	0	1	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0053	4081	1	1	0	0	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/1	t0054	4069	1	0	0	0	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0055	4081	1	0	0	1	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0056	4081	1	0	1	0	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0057	4081	1	0	0	1	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0058	4080	1	0	1	0	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0059	4070	1	0	0	1	0	0	copy fasta	SLC6A2	chr16	55650988	55711192