JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC6A2_chr16_55650988_55711192	0/0	t0060	4082	1	0	0	0	0	1	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0061	4081	1	0	1	0	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0062	4077	1	1	0	0	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0063	4080	1	1	0	0	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0064	4080	1	1	0	0	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0065	4080	1	0	0	0	0	1	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0066	4075	1	1	0	0	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0067	4079	1	1	0	0	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0068	4079	1	1	0	0	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0069	4076	1	1	0	0	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0070	4080	1	1	0	0	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0071	4081	1	0	0	0	0	1	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0072	4070	1	1	0	0	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A2_chr16_55650988_55711192	0/0	t0073	4081	1	1	0	0	0	0	copy fasta	SLC6A2	chr16	55650988	55711192
SLC6A3_chr5_1387794_1450440	0/1	t0001	2080	169	21	34	81	8	24	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A3_chr5_1387794_1450440	0/0	t0002	2080	59	9	17	20	2	11	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A3_chr5_1387794_1450440	0/0	t0003	2040	24	0	1	19	3	1	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A3_chr5_1387794_1450440	0/0	t0004	2040	16	0	12	0	0	4	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A3_chr5_1387794_1450440	0/0	t0005	2080	12	12	0	0	0	0	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A3_chr5_1387794_1450440	0/0	t0006	2080	9	0	0	9	0	0	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A3_chr5_1387794_1450440	0/0	t0007	2080	8	0	0	7	0	1	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A3_chr5_1387794_1450440	0/0	t0008	2040	6	0	4	0	2	0	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A3_chr5_1387794_1450440	0/0	t0009	2080	5	5	0	0	0	0	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A3_chr5_1387794_1450440	0/0	t0010	2080	5	0	0	5	0	0	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A3_chr5_1387794_1450440	0/0	t0011	2080	4	4	0	0	0	0	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A3_chr5_1387794_1450440	0/0	t0012	2080	4	4	0	0	0	0	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A3_chr5_1387794_1450440	0/0	t0013	2000	4	3	1	0	0	0	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A3_chr5_1387794_1450440	0/0	t0014	2080	3	3	0	0	0	0	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A3_chr5_1387794_1450440	0/0	t0015	2040	3	3	0	0	0	0	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A3_chr5_1387794_1450440	0/0	t0016	2040	3	3	0	0	0	0	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A3_chr5_1387794_1450440	0/0	t0017	2080	3	3	0	0	0	0	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A3_chr5_1387794_1450440	0/0	t0018	1795	3	3	0	0	0	0	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A3_chr5_1387794_1450440	0/0	t0019	2040	2	2	0	0	0	0	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A3_chr5_1387794_1450440	0/0	t0020	2035	2	2	0	0	0	0	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A3_chr5_1387794_1450440	0/0	t0021	2080	2	0	0	0	0	2	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A3_chr5_1387794_1450440	0/0	t0022	2080	2	2	0	0	0	0	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A3_chr5_1387794_1450440	0/0	t0023	1998	2	2	0	0	0	0	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A3_chr5_1387794_1450440	0/0	t0024	2080	1	1	0	0	0	0	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A3_chr5_1387794_1450440	0/0	t0025	2080	1	0	0	0	0	1	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A3_chr5_1387794_1450440	0/0	t0026	2080	1	1	0	0	0	0	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A3_chr5_1387794_1450440	0/0	t0027	2080	1	1	0	0	0	0	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A3_chr5_1387794_1450440	0/0	t0028	2040	1	0	0	0	0	1	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A3_chr5_1387794_1450440	0/0	t0029	2040	1	0	1	0	0	0	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A3_chr5_1387794_1450440	0/0	t0030	2200	1	1	0	0	0	0	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A3_chr5_1387794_1450440	0/0	t0031	2080	1	1	0	0	0	0	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A3_chr5_1387794_1450440	0/0	t0032	2080	1	1	0	0	0	0	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A3_chr5_1387794_1450440	0/0	t0033	1960	1	0	0	1	0	0	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A3_chr5_1387794_1450440	0/0	t0034	1920	1	0	0	0	1	0	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A3_chr5_1387794_1450440	0/0	t0035	2040	1	1	0	0	0	0	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A3_chr5_1387794_1450440	0/0	t0036	2040	1	1	0	0	0	0	copy fasta	SLC6A3	chr5	1387794	1450440