JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC6A3_chr5_1387794_1450440	0/0	t0037	2040	1	1	0	0	0	0	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A3_chr5_1387794_1450440	0/0	t0038	2040	1	0	1	0	0	0	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A3_chr5_1387794_1450440	0/0	t0039	1875	1	0	1	0	0	0	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A3_chr5_1387794_1450440	0/0	t0040	2080	1	0	0	1	0	0	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A3_chr5_1387794_1450440	0/0	t0041	2080	1	1	0	0	0	0	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A3_chr5_1387794_1450440	0/0	t0042	2080	1	0	0	1	0	0	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A3_chr5_1387794_1450440	0/0	t0043	2205	1	1	0	0	0	0	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A3_chr5_1387794_1450440	0/0	t0044	1995	1	0	0	0	0	1	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A3_chr5_1387794_1450440	0/0	t0045	2040	1	1	0	0	0	0	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A3_chr5_1387794_1450440	0/0	t0046	2000	1	1	0	0	0	0	copy fasta	SLC6A3	chr5	1387794	1450440
SLC6A4_chr17_30189319_30240697	0/0	t0001	4442	98	6	23	44	4	21	copy fasta	SLC6A4	chr17	30189319	30240697
SLC6A4_chr17_30189319_30240697	0/1	t0002	4443	64	14	20	9	6	14	copy fasta	SLC6A4	chr17	30189319	30240697
SLC6A4_chr17_30189319_30240697	1/0	t0003	4443	23	10	1	8	0	3	copy fasta	SLC6A4	chr17	30189319	30240697
SLC6A4_chr17_30189319_30240697	0/0	t0004	4442	10	3	4	1	2	0	copy fasta	SLC6A4	chr17	30189319	30240697
SLC6A4_chr17_30189319_30240697	0/0	t0005	4443	6	3	1	2	0	0	copy fasta	SLC6A4	chr17	30189319	30240697
SLC6A4_chr17_30189319_30240697	0/0	t0006	4442	6	2	2	2	0	0	copy fasta	SLC6A4	chr17	30189319	30240697
SLC6A4_chr17_30189319_30240697	0/0	t0007	4442	6	6	0	0	0	0	copy fasta	SLC6A4	chr17	30189319	30240697
SLC6A4_chr17_30189319_30240697	0/0	t0008	4442	5	5	0	0	0	0	copy fasta	SLC6A4	chr17	30189319	30240697
SLC6A4_chr17_30189319_30240697	0/0	t0009	4443	5	3	2	0	0	0	copy fasta	SLC6A4	chr17	30189319	30240697
SLC6A4_chr17_30189319_30240697	0/0	t0010	4442	4	4	0	0	0	0	copy fasta	SLC6A4	chr17	30189319	30240697
SLC6A4_chr17_30189319_30240697	0/0	t0011	4442	4	4	0	0	0	0	copy fasta	SLC6A4	chr17	30189319	30240697
SLC6A4_chr17_30189319_30240697	0/0	t0012	4442	4	4	0	0	0	0	copy fasta	SLC6A4	chr17	30189319	30240697
SLC6A4_chr17_30189319_30240697	0/0	t0013	4443	4	0	0	3	0	1	copy fasta	SLC6A4	chr17	30189319	30240697
SLC6A4_chr17_30189319_30240697	0/0	t0014	4443	3	3	0	0	0	0	copy fasta	SLC6A4	chr17	30189319	30240697
SLC6A4_chr17_30189319_30240697	0/0	t0015	4443	3	3	0	0	0	0	copy fasta	SLC6A4	chr17	30189319	30240697
SLC6A4_chr17_30189319_30240697	0/0	t0016	4442	3	3	0	0	0	0	copy fasta	SLC6A4	chr17	30189319	30240697
SLC6A4_chr17_30189319_30240697	0/0	t0017	4442	3	3	0	0	0	0	copy fasta	SLC6A4	chr17	30189319	30240697
SLC6A4_chr17_30189319_30240697	0/0	t0018	4442	2	2	0	0	0	0	copy fasta	SLC6A4	chr17	30189319	30240697
SLC6A4_chr17_30189319_30240697	0/0	t0019	4442	2	0	2	0	0	0	copy fasta	SLC6A4	chr17	30189319	30240697
SLC6A4_chr17_30189319_30240697	0/0	t0020	4443	2	0	0	0	0	2	copy fasta	SLC6A4	chr17	30189319	30240697
SLC6A4_chr17_30189319_30240697	0/0	t0021	4442	2	2	0	0	0	0	copy fasta	SLC6A4	chr17	30189319	30240697
SLC6A4_chr17_30189319_30240697	0/0	t0022	4443	2	2	0	0	0	0	copy fasta	SLC6A4	chr17	30189319	30240697
SLC6A4_chr17_30189319_30240697	0/0	t0023	4443	2	0	0	2	0	0	copy fasta	SLC6A4	chr17	30189319	30240697
SLC6A4_chr17_30189319_30240697	0/0	t0024	4442	2	0	0	2	0	0	copy fasta	SLC6A4	chr17	30189319	30240697
SLC6A4_chr17_30189319_30240697	0/0	t0025	4442	1	1	0	0	0	0	copy fasta	SLC6A4	chr17	30189319	30240697
SLC6A4_chr17_30189319_30240697	0/0	t0026	4443	1	1	0	0	0	0	copy fasta	SLC6A4	chr17	30189319	30240697
SLC6A4_chr17_30189319_30240697	0/0	t0027	4442	1	1	0	0	0	0	copy fasta	SLC6A4	chr17	30189319	30240697
SLC6A4_chr17_30189319_30240697	0/0	t0028	4443	1	1	0	0	0	0	copy fasta	SLC6A4	chr17	30189319	30240697
SLC6A4_chr17_30189319_30240697	0/0	t0029	4443	1	0	0	0	0	1	copy fasta	SLC6A4	chr17	30189319	30240697
SLC6A4_chr17_30189319_30240697	0/0	t0030	4443	1	0	0	0	1	0	copy fasta	SLC6A4	chr17	30189319	30240697
SLC6A4_chr17_30189319_30240697	0/0	t0031	4442	1	0	0	0	1	0	copy fasta	SLC6A4	chr17	30189319	30240697
SLC6A4_chr17_30189319_30240697	0/0	t0032	4442	1	1	0	0	0	0	copy fasta	SLC6A4	chr17	30189319	30240697
SLC6A4_chr17_30189319_30240697	0/0	t0033	4442	1	1	0	0	0	0	copy fasta	SLC6A4	chr17	30189319	30240697
SLC6A4_chr17_30189319_30240697	0/0	t0034	4443	1	0	1	0	0	0	copy fasta	SLC6A4	chr17	30189319	30240697
SLC6A4_chr17_30189319_30240697	0/0	t0035	4442	1	0	0	1	0	0	copy fasta	SLC6A4	chr17	30189319	30240697
SLC6A4_chr17_30189319_30240697	0/0	t0036	4443	1	1	0	0	0	0	copy fasta	SLC6A4	chr17	30189319	30240697
SLC6A4_chr17_30189319_30240697	0/0	t0037	4442	1	1	0	0	0	0	copy fasta	SLC6A4	chr17	30189319	30240697
SLC6A4_chr17_30189319_30240697	0/0	t0038	4443	1	0	1	0	0	0	copy fasta	SLC6A4	chr17	30189319	30240697
SLC6A4_chr17_30189319_30240697	0/0	t0039	4442	1	1	0	0	0	0	copy fasta	SLC6A4	chr17	30189319	30240697
SLC6A4_chr17_30189319_30240697	0/0	t0040	4442	1	1	0	0	0	0	copy fasta	SLC6A4	chr17	30189319	30240697