JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC6A4_chr17_30189319_30240697	0/0	t0041	4443	1	0	1	0	0	0	copy fasta	SLC6A4	chr17	30189319	30240697
SLC6A4_chr17_30189319_30240697	0/0	t0042	4442	1	1	0	0	0	0	copy fasta	SLC6A4	chr17	30189319	30240697
SLC6A4_chr17_30189319_30240697	0/0	t0043	4442	1	0	1	0	0	0	copy fasta	SLC6A4	chr17	30189319	30240697
SLC6A4_chr17_30189319_30240697	0/0	t0044	4442	1	0	1	0	0	0	copy fasta	SLC6A4	chr17	30189319	30240697
SLC6A4_chr17_30189319_30240697	0/0	t0045	4443	1	1	0	0	0	0	copy fasta	SLC6A4	chr17	30189319	30240697
SLC6A5_chr11_20594608_20664285	0/0	t0001	4475	114	4	19	70	4	17	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0002	4475	35	3	14	15	0	3	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/1	t0003	4481	25	5	5	9	1	4	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0004	4485	15	0	10	0	3	2	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0005	4479	11	0	0	11	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0006	4475	11	3	3	0	1	4	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0007	4475	8	8	0	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0008	4479	7	5	1	0	0	1	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	1/0	t0009	4483	6	5	0	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0010	4483	6	3	2	1	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0011	4475	6	5	1	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0012	4477	6	5	1	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0013	4489	5	5	0	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0014	4481	5	1	2	0	0	2	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0015	4472	5	5	0	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0016	4489	4	2	0	0	2	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0017	4473	4	4	0	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0018	4481	4	0	3	0	1	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0019	4475	4	0	3	1	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0020	4481	4	0	0	4	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0021	4487	4	0	1	0	0	3	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0022	4481	3	3	0	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0023	4487	2	2	0	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0024	4485	2	0	0	0	2	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0025	4477	2	2	0	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0026	4481	2	2	0	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0027	4483	2	0	1	0	0	1	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0028	4477	2	2	0	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0029	4479	2	2	0	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0030	4475	2	2	0	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0031	4483	2	0	0	0	1	1	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0032	4475	2	0	1	0	0	1	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0033	4475	2	0	0	2	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0034	4475	1	1	0	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0035	4477	1	1	0	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0036	4475	1	1	0	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0037	4481	1	0	0	1	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0038	4485	1	1	0	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0039	4481	1	0	0	1	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0040	4475	1	0	1	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0041	4477	1	1	0	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0042	4477	1	1	0	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0043	4473	1	0	0	1	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0044	4475	1	0	1	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0045	4475	1	0	0	1	0	0	copy fasta	SLC6A5	chr11	20594608	20664285