JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC6A5_chr11_20594608_20664285	0/0	t0046	4481	1	0	0	1	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0047	4473	1	0	0	1	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0048	4479	1	1	0	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0049	4485	1	0	1	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0050	4493	1	0	0	1	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0051	4485	1	0	0	0	1	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0052	4483	1	0	0	1	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0053	4475	1	0	0	1	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0054	4475	1	0	0	1	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0055	4475	1	0	0	1	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0056	4477	1	1	0	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0057	4473	1	1	0	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0058	4479	1	1	0	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0059	4485	1	1	0	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0060	4477	1	1	0	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0061	4483	1	1	0	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0062	4489	1	0	0	0	0	1	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0063	4481	1	1	0	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0064	4479	1	1	0	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0065	4475	1	0	0	0	0	1	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0066	4483	1	1	0	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0067	4485	1	0	1	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0068	4483	1	1	0	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0069	4481	1	0	0	0	0	1	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0070	4479	1	1	0	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0071	4481	1	1	0	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0072	4477	1	1	0	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	t0073	4487	1	0	1	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A6_chr3_14397606_14494349	0/0	t0001	4642	80	7	13	55	0	5	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/1	t0002	4637	59	2	26	13	9	8	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	t0003	4641	56	3	9	33	0	11	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	t0004	4642	22	1	2	13	0	6	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	t0005	4642	21	17	4	0	0	0	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	t0006	4642	12	12	0	0	0	0	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	t0007	4642	12	9	3	0	0	0	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	t0008	4642	7	7	0	0	0	0	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	t0009	4636	6	0	4	1	1	0	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	t0010	4644	6	1	0	1	0	4	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	t0011	4638	5	0	0	2	1	2	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	t0012	4637	4	0	1	3	0	0	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	t0013	4643	4	4	0	0	0	0	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	t0014	4642	4	0	0	4	0	0	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	t0015	4638	4	0	1	0	0	3	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	t0016	4641	4	4	0	0	0	0	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	t0017	4645	4	4	0	0	0	0	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	t0018	4647	4	0	2	0	0	2	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	t0019	4638	3	0	0	3	0	0	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	t0020	4644	3	0	0	3	0	0	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	t0021	4637	2	0	0	2	0	0	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	t0022	4637	2	0	1	0	0	1	copy fasta	SLC6A6	chr3	14397606	14494349