JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC6A6_chr3_14397606_14494349	0/0	t0023	4637	2	1	1	0	0	0	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	t0024	4641	2	2	0	0	0	0	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	t0025	4641	2	2	0	0	0	0	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	1/0	t0026	4638	2	1	0	0	0	0	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	t0027	4642	2	0	0	2	0	0	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	t0028	4641	2	0	0	0	2	0	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	t0029	4643	2	1	1	0	0	0	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	t0030	4642	2	2	0	0	0	0	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	t0031	4641	2	0	2	0	0	0	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	t0032	4642	2	0	0	2	0	0	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	t0033	4642	1	1	0	0	0	0	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	t0034	4637	1	0	0	0	0	1	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	t0035	4637	1	0	0	0	1	0	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	t0036	4637	1	0	0	0	0	1	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	t0037	4637	1	0	0	0	0	1	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	t0038	4641	1	1	0	0	0	0	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	t0039	4641	1	1	0	0	0	0	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	t0040	4642	1	1	0	0	0	0	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	t0041	4638	1	0	1	0	0	0	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	t0042	4637	1	0	0	0	0	1	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	t0043	4641	1	1	0	0	0	0	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	t0044	4641	1	1	0	0	0	0	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	t0045	4641	1	1	0	0	0	0	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	t0046	4637	1	0	1	0	0	0	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	t0047	4640	1	1	0	0	0	0	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	t0048	4642	1	0	1	0	0	0	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	t0049	4642	1	1	0	0	0	0	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	t0050	4642	1	0	0	1	0	0	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	t0051	4642	1	1	0	0	0	0	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	t0052	4641	1	0	0	1	0	0	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	t0053	4642	1	1	0	0	0	0	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	t0054	4642	1	1	0	0	0	0	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	t0055	4642	1	1	0	0	0	0	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	t0056	4642	1	0	0	1	0	0	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	t0057	4644	1	0	0	1	0	0	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	t0058	4644	1	1	0	0	0	0	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	t0059	4638	1	1	0	0	0	0	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	t0060	4638	1	0	1	0	0	0	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	t0061	4642	1	1	0	0	0	0	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	t0062	4642	1	0	0	1	0	0	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	t0063	4645	1	1	0	0	0	0	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	t0064	4642	1	1	0	0	0	0	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A7_chr5_150185062_150216063	0/0	t0001	1715	105	4	29	48	6	18	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	t0002	1715	82	2	15	55	5	5	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/1	t0003	1715	38	5	2	24	1	5	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	t0004	1715	37	5	3	23	0	6	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	1/0	t0005	1715	23	0	1	20	1	0	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	t0006	1715	16	0	7	3	3	3	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	t0007	1715	14	0	5	9	0	0	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	t0008	1715	13	12	1	0	0	0	copy fasta	SLC6A7	chr5	150185062	150216063