JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC6A7_chr5_150185062_150216063	0/0	t0009	1715	12	11	0	0	0	1	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	t0010	1715	9	6	1	0	0	2	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	t0011	1715	9	9	0	0	0	0	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	t0012	1715	8	0	0	7	0	1	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	t0013	1715	7	0	7	0	0	0	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	t0014	1715	7	7	0	0	0	0	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	t0015	1715	6	3	0	3	0	0	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	t0016	1715	6	6	0	0	0	0	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	t0017	1715	5	0	1	3	0	1	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	t0018	1715	5	0	0	5	0	0	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	t0019	1715	4	4	0	0	0	0	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	t0020	1713	4	0	0	4	0	0	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	t0021	1715	4	0	0	3	0	1	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	t0022	1715	4	0	3	0	1	0	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	t0023	1715	3	0	0	2	0	1	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	t0024	1715	3	3	0	0	0	0	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	t0025	1715	3	3	0	0	0	0	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	t0026	1715	3	3	0	0	0	0	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	t0027	1715	3	3	0	0	0	0	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	t0028	1715	2	0	0	1	0	1	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	t0029	1715	2	0	0	2	0	0	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	t0030	1715	2	0	0	1	0	1	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	t0031	1715	2	0	2	0	0	0	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	t0032	1715	2	2	0	0	0	0	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	t0033	1715	2	2	0	0	0	0	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	t0034	1715	1	0	0	1	0	0	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	t0035	1715	1	0	0	0	0	1	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	t0036	1715	1	0	1	0	0	0	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	t0037	1713	1	0	0	1	0	0	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	t0038	1715	1	0	1	0	0	0	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	t0039	1715	1	0	0	1	0	0	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	t0040	1715	1	0	0	1	0	0	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	t0041	1715	1	0	0	1	0	0	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	t0042	1715	1	1	0	0	0	0	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	t0043	1715	1	1	0	0	0	0	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	t0044	1715	1	1	0	0	0	0	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	t0045	1715	1	0	1	0	0	0	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	t0046	1713	1	0	0	1	0	0	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	t0047	1713	1	0	0	1	0	0	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	t0048	1713	1	0	0	1	0	0	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	t0049	1715	1	0	0	1	0	0	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	t0050	1715	1	0	0	0	0	1	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	t0051	1715	1	1	0	0	0	0	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	t0052	1715	1	1	0	0	0	0	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	t0053	1715	1	1	0	0	0	0	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	t0054	1715	1	1	0	0	0	0	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	t0055	1715	1	1	0	0	0	0	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	t0056	1715	1	0	0	0	1	0	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A8_chrX_153682926_153701588	0/1	t0001	2024	154	14	40	68	5	26	copy fasta	SLC6A8	chrX	153682926	153701588
SLC6A8_chrX_153682926_153701588	0/0	t0002	2024	34	14	3	12	3	2	copy fasta	SLC6A8	chrX	153682926	153701588