JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC6A8_chrX_153682926_153701588	0/0	t0003	2024	15	14	1	0	0	0	copy fasta	SLC6A8	chrX	153682926	153701588
SLC6A8_chrX_153682926_153701588	0/0	t0004	2024	15	4	0	11	0	0	copy fasta	SLC6A8	chrX	153682926	153701588
SLC6A8_chrX_153682926_153701588	0/0	t0005	2024	6	4	2	0	0	0	copy fasta	SLC6A8	chrX	153682926	153701588
SLC6A8_chrX_153682926_153701588	0/0	t0006	2027	6	6	0	0	0	0	copy fasta	SLC6A8	chrX	153682926	153701588
SLC6A8_chrX_153682926_153701588	0/0	t0007	2021	5	0	4	0	0	1	copy fasta	SLC6A8	chrX	153682926	153701588
SLC6A8_chrX_153682926_153701588	0/0	t0008	2021	4	0	0	4	0	0	copy fasta	SLC6A8	chrX	153682926	153701588
SLC6A8_chrX_153682926_153701588	0/0	t0009	2024	4	4	0	0	0	0	copy fasta	SLC6A8	chrX	153682926	153701588
SLC6A8_chrX_153682926_153701588	0/0	t0010	2024	4	4	0	0	0	0	copy fasta	SLC6A8	chrX	153682926	153701588
SLC6A8_chrX_153682926_153701588	0/0	t0011	2021	2	2	0	0	0	0	copy fasta	SLC6A8	chrX	153682926	153701588
SLC6A8_chrX_153682926_153701588	0/0	t0012	2025	2	0	1	1	0	0	copy fasta	SLC6A8	chrX	153682926	153701588
SLC6A8_chrX_153682926_153701588	0/0	t0013	2024	2	2	0	0	0	0	copy fasta	SLC6A8	chrX	153682926	153701588
SLC6A8_chrX_153682926_153701588	0/0	t0014	2024	1	0	1	0	0	0	copy fasta	SLC6A8	chrX	153682926	153701588
SLC6A8_chrX_153682926_153701588	0/0	t0015	2034	1	0	0	1	0	0	copy fasta	SLC6A8	chrX	153682926	153701588
SLC6A8_chrX_153682926_153701588	0/0	t0016	2026	1	0	0	0	0	1	copy fasta	SLC6A8	chrX	153682926	153701588
SLC6A8_chrX_153682926_153701588	0/0	t0017	2021	1	0	0	1	0	0	copy fasta	SLC6A8	chrX	153682926	153701588
SLC6A8_chrX_153682926_153701588	0/0	t0018	2025	1	0	0	1	0	0	copy fasta	SLC6A8	chrX	153682926	153701588
SLC6A8_chrX_153682926_153701588	0/0	t0019	2021	1	1	0	0	0	0	copy fasta	SLC6A8	chrX	153682926	153701588
SLC6A8_chrX_153682926_153701588	0/0	t0020	1993	1	0	0	1	0	0	copy fasta	SLC6A8	chrX	153682926	153701588
SLC6A8_chrX_153682926_153701588	0/0	t0021	2026	1	0	0	0	0	1	copy fasta	SLC6A8	chrX	153682926	153701588
SLC6A8_chrX_153682926_153701588	0/0	t0022	2024	1	0	0	1	0	0	copy fasta	SLC6A8	chrX	153682926	153701588
SLC6A8_chrX_153682926_153701588	0/0	t0023	2025	1	0	0	1	0	0	copy fasta	SLC6A8	chrX	153682926	153701588
SLC6A8_chrX_153682926_153701588	0/0	t0024	2024	1	0	0	1	0	0	copy fasta	SLC6A8	chrX	153682926	153701588
SLC6A8_chrX_153682926_153701588	0/0	t0025	2025	1	0	0	1	0	0	copy fasta	SLC6A8	chrX	153682926	153701588
SLC6A8_chrX_153682926_153701588	0/0	t0026	2027	1	0	0	1	0	0	copy fasta	SLC6A8	chrX	153682926	153701588
SLC6A8_chrX_153682926_153701588	1/0	t0027	2024	1	0	0	0	0	0	copy fasta	SLC6A8	chrX	153682926	153701588
SLC6A8_chrX_153682926_153701588	0/0	t0028	2024	1	0	0	0	0	1	copy fasta	SLC6A8	chrX	153682926	153701588
SLC6A8_chrX_153682926_153701588	0/0	t0029	2024	1	1	0	0	0	0	copy fasta	SLC6A8	chrX	153682926	153701588
SLC6A8_chrX_153682926_153701588	0/0	t0030	2024	1	1	0	0	0	0	copy fasta	SLC6A8	chrX	153682926	153701588
SLC6A8_chrX_153682926_153701588	0/0	t0031	2024	1	1	0	0	0	0	copy fasta	SLC6A8	chrX	153682926	153701588
SLC6A8_chrX_153682926_153701588	0/0	t0032	2025	1	0	0	1	0	0	copy fasta	SLC6A8	chrX	153682926	153701588
SLC6A8_chrX_153682926_153701588	0/0	t0033	2025	1	0	0	1	0	0	copy fasta	SLC6A8	chrX	153682926	153701588
SLC6A8_chrX_153682926_153701588	0/0	t0034	2024	1	0	1	0	0	0	copy fasta	SLC6A8	chrX	153682926	153701588
SLC6A8_chrX_153682926_153701588	0/0	t0035	2024	1	0	0	1	0	0	copy fasta	SLC6A8	chrX	153682926	153701588
SLC6A8_chrX_153682926_153701588	0/0	t0036	2024	1	0	0	1	0	0	copy fasta	SLC6A8	chrX	153682926	153701588
SLC6A8_chrX_153682926_153701588	0/0	t0037	2020	1	0	0	1	0	0	copy fasta	SLC6A8	chrX	153682926	153701588
SLC6A8_chrX_153682926_153701588	0/0	t0038	2024	1	0	0	1	0	0	copy fasta	SLC6A8	chrX	153682926	153701588
SLC6A8_chrX_153682926_153701588	0/0	t0039	2024	1	1	0	0	0	0	copy fasta	SLC6A8	chrX	153682926	153701588
SLC6A8_chrX_153682926_153701588	0/0	t0040	2024	1	0	0	1	0	0	copy fasta	SLC6A8	chrX	153682926	153701588
SLC6A8_chrX_153682926_153701588	0/0	t0041	2024	1	0	1	0	0	0	copy fasta	SLC6A8	chrX	153682926	153701588
SLC6A8_chrX_153682926_153701588	0/0	t0042	2021	1	0	0	0	1	0	copy fasta	SLC6A8	chrX	153682926	153701588
SLC6A8_chrX_153682926_153701588	0/0	t0043	2024	1	1	0	0	0	0	copy fasta	SLC6A8	chrX	153682926	153701588
SLC6A8_chrX_153682926_153701588	0/0	t0044	2021	1	0	0	0	0	1	copy fasta	SLC6A8	chrX	153682926	153701588
SLC6A8_chrX_153682926_153701588	0/0	t0045	2023	1	0	0	1	0	0	copy fasta	SLC6A8	chrX	153682926	153701588
SLC6A8_chrX_153682926_153701588	0/0	t0046	2024	1	0	0	1	0	0	copy fasta	SLC6A8	chrX	153682926	153701588
SLC6A8_chrX_153682926_153701588	0/0	t0047	2025	1	0	0	0	0	1	copy fasta	SLC6A8	chrX	153682926	153701588
SLC6A8_chrX_153682926_153701588	0/0	t0048	2027	1	1	0	0	0	0	copy fasta	SLC6A8	chrX	153682926	153701588
SLC6A8_chrX_153682926_153701588	0/0	t0049	2025	1	1	0	0	0	0	copy fasta	SLC6A8	chrX	153682926	153701588
SLC6A8_chrX_153682926_153701588	0/0	t0050	2024	1	0	0	0	1	0	copy fasta	SLC6A8	chrX	153682926	153701588
SLC6A9_chr1_43991483_44036462	1/1	t0001	1305	249	54	55	103	6	29	copy fasta	SLC6A9	chr1	43991483	44036462
SLC6A9_chr1_43991483_44036462	0/0	t0002	1305	83	23	7	43	4	6	copy fasta	SLC6A9	chr1	43991483	44036462