JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC7A14_chr3_170454548_170591075	0/0	t0039	7826	1	0	0	1	0	0	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	t0040	7825	1	0	0	1	0	0	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	t0041	7826	1	0	1	0	0	0	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/1	t0042	7826	1	0	0	0	0	0	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	t0043	7824	1	0	0	1	0	0	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	t0044	7824	1	1	0	0	0	0	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	t0045	7825	1	1	0	0	0	0	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	t0046	7824	1	0	0	0	0	1	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	t0047	7824	1	1	0	0	0	0	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	t0048	7826	1	0	0	0	0	1	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	t0049	7828	1	1	0	0	0	0	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	t0050	7826	1	1	0	0	0	0	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A1_chr13_29504414_29600688	0/1	t0001	5449	84	18	15	39	5	6	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	t0002	5448	35	0	3	31	0	1	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	t0003	5448	30	13	6	9	0	2	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	t0004	5448	23	0	1	19	0	3	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	t0005	5449	19	2	4	7	0	6	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	t0006	5448	17	14	3	0	0	0	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	t0007	5458	13	0	9	1	1	2	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	t0008	5454	11	7	2	1	1	0	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	t0009	5449	9	0	4	4	0	1	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	t0010	5449	8	8	0	0	0	0	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	t0011	5448	8	8	0	0	0	0	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	t0012	5486	8	0	3	0	2	3	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	t0013	5458	7	1	2	0	1	3	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	t0014	5449	7	0	0	7	0	0	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	t0015	5458	4	0	3	0	1	0	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	t0016	5448	4	4	0	0	0	0	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	t0017	5453	3	3	0	0	0	0	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	t0018	5449	3	0	2	0	1	0	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	t0019	5458	2	0	2	0	0	0	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	t0020	5459	2	1	0	1	0	0	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	t0021	5458	2	0	0	0	2	0	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	1/0	t0022	5454	2	1	0	0	0	0	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	t0023	5453	2	2	0	0	0	0	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	t0024	5449	2	0	1	0	0	1	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	t0025	5448	2	2	0	0	0	0	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	t0026	5453	1	1	0	0	0	0	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	t0027	5453	1	1	0	0	0	0	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	t0028	5454	1	1	0	0	0	0	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	t0029	5454	1	0	0	0	0	1	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	t0030	5454	1	1	0	0	0	0	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	t0031	5453	1	1	0	0	0	0	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	t0032	5453	1	1	0	0	0	0	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	t0033	5449	1	1	0	0	0	0	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	t0034	5448	1	0	0	1	0	0	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	t0035	5449	1	0	0	0	0	1	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	t0036	5448	1	0	0	1	0	0	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	t0037	5449	1	0	1	0	0	0	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	t0038	5448	1	0	0	1	0	0	copy fasta	SLC7A1	chr13	29504414	29600688