JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC7A1_chr13_29504414_29600688	0/0	t0039	5448	1	0	0	1	0	0	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	t0040	5449	1	0	1	0	0	0	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	t0041	5449	1	1	0	0	0	0	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	t0042	5449	1	0	0	0	0	1	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	t0043	5448	1	0	0	1	0	0	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	t0044	5448	1	0	0	0	0	1	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	t0045	5448	1	1	0	0	0	0	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	t0046	5448	1	1	0	0	0	0	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	t0047	5448	1	1	0	0	0	0	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	t0048	5448	1	1	0	0	0	0	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A2_chr8_17492088_17575566	0/0	t0001	5640	115	7	21	77	1	9	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0002	5640	94	1	25	47	7	14	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0003	5640	40	4	3	28	1	4	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0004	5640	24	8	2	10	0	4	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0005	5640	10	1	4	3	0	2	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0006	5639	10	1	2	7	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0007	5640	8	0	0	8	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0008	5640	8	7	1	0	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0009	5641	6	6	0	0	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0010	5640	4	4	0	0	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0011	5640	4	0	0	4	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0012	5640	4	0	4	0	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/1	t0013	5640	4	0	0	0	3	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0014	5640	4	0	0	4	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0015	5638	4	0	0	4	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0016	5640	4	0	0	0	0	4	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0017	5640	4	4	0	0	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0018	5639	4	0	4	0	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0019	5640	4	4	0	0	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0020	5640	3	3	0	0	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0021	5640	3	3	0	0	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0022	5640	3	3	0	0	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0023	5640	3	3	0	0	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0024	5640	3	0	0	0	2	1	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0025	5640	3	0	1	0	0	2	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0026	5642	3	0	2	0	1	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0027	5639	3	3	0	0	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0028	5639	3	3	0	0	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0029	5640	2	0	2	0	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0030	5640	2	1	0	0	1	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0031	5640	2	2	0	0	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0032	5640	2	2	0	0	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0033	5640	2	0	0	2	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0034	5640	2	0	0	0	0	2	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0035	5639	2	0	2	0	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0036	5640	2	1	1	0	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0037	5640	1	1	0	0	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0038	5636	1	1	0	0	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0039	5640	1	0	1	0	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0040	5636	1	1	0	0	0	0	copy fasta	SLC7A2	chr8	17492088	17575566