JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC7A2_chr8_17492088_17575566	0/0	t0041	5640	1	1	0	0	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0042	5640	1	1	0	0	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0043	5640	1	1	0	0	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0044	5640	1	1	0	0	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0045	5639	1	1	0	0	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0046	5639	1	1	0	0	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0047	5640	1	0	1	0	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0048	5636	1	1	0	0	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0049	5640	1	1	0	0	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0050	5640	1	1	0	0	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0051	5640	1	1	0	0	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0052	5640	1	0	0	0	0	1	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0053	5640	1	0	0	0	0	1	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0054	5639	1	0	0	1	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0055	5640	1	0	0	1	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0056	5640	1	0	0	0	0	1	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0057	5640	1	0	0	1	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0058	5640	1	0	0	1	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0059	5641	1	0	1	0	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0060	5640	1	0	0	0	0	1	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0061	5640	1	0	0	1	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0062	5640	1	1	0	0	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0063	5640	1	0	0	0	0	1	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0064	5640	1	0	0	1	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0065	5640	1	1	0	0	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0066	5640	1	0	1	0	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0067	5639	1	0	0	1	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0068	5640	1	0	0	1	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0069	5640	1	0	1	0	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0070	5640	1	0	0	1	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0071	5636	1	0	1	0	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0072	5640	1	1	0	0	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	1/0	t0073	5639	1	0	0	0	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0074	5640	1	1	0	0	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0075	5640	1	0	0	1	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0076	5640	1	1	0	0	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0077	5640	1	0	0	1	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0078	5640	1	1	0	0	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0079	5640	1	1	0	0	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0080	5640	1	1	0	0	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0081	5640	1	1	0	0	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0082	5641	1	1	0	0	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0083	5639	1	1	0	0	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0084	5640	1	1	0	0	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0085	5640	1	1	0	0	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0086	5639	1	0	0	0	0	1	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0087	5639	1	0	0	1	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	t0088	5639	1	1	0	0	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A3_chrX_70920579_70936096	1/1	t0001	380	308	79	59	127	11	30	copy fasta	SLC7A3	chrX	70920579	70936096
SLC7A3_chrX_70920579_70936096	0/0	t0002	380	1	1	0	0	0	0	copy fasta	SLC7A3	chrX	70920579	70936096