JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BDH1_chr3_197504783_197560968	0/0	t0003	2479	6	1	4	0	0	1	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0004	2511	6	0	0	6	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0005	2507	6	1	0	3	0	2	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0006	2495	6	0	0	5	0	1	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0007	2497	5	0	2	3	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0008	2483	4	3	0	1	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0009	2493	4	0	2	1	0	1	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0010	2496	3	1	2	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0011	2495	3	0	0	3	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0012	2429	3	0	0	0	0	3	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0013	2490	3	1	1	0	0	1	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0014	2487	3	0	1	1	0	1	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0015	2497	3	0	1	2	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0016	2499	3	0	0	3	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0017	2507	3	0	3	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0018	2491	3	0	3	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0019	2431	2	0	2	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0020	2427	2	0	2	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0021	2425	2	0	1	0	1	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0022	2505	2	0	1	1	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0023	2501	2	0	0	1	0	1	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0024	2498	2	1	1	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0025	2495	2	1	0	1	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0026	2493	2	1	0	0	1	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0027	2491	2	0	1	0	1	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0028	2491	2	2	0	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0029	2489	2	1	0	0	0	1	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0030	2481	2	0	1	1	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0031	2517	2	0	1	1	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0032	2503	2	0	0	1	1	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0033	2501	2	0	0	2	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0034	2499	2	0	0	1	1	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0035	2523	2	0	0	1	1	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0036	2507	2	0	0	1	0	1	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0037	2497	2	0	0	2	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0038	2513	2	0	2	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0039	2503	1	1	0	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0040	2469	1	1	0	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0041	2494	1	1	0	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0042	2480	1	1	0	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0043	2506	1	1	0	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0044	2515	1	1	0	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0045	2477	1	1	0	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0046	2504	1	1	0	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0047	2497	1	1	0	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0048	2492	1	1	0	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0049	2488	1	0	0	0	0	1	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0050	2488	1	1	0	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0051	2482	1	1	0	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0052	2473	1	0	1	0	0	0	copy fasta	BDH1	chr3	197504783	197560968