JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC7A3_chrX_70920579_70936096	0/0	t0003	381	1	0	0	1	0	0	copy fasta	SLC7A3	chrX	70920579	70936096
SLC7A3_chrX_70920579_70936096	0/0	t0004	380	1	0	0	1	0	0	copy fasta	SLC7A3	chrX	70920579	70936096
SLC7A3_chrX_70920579_70936096	0/0	t0005	381	1	0	1	0	0	0	copy fasta	SLC7A3	chrX	70920579	70936096
SLC7A4_chr22_21023718_21037561	1/0	t0001	409	236	58	39	101	15	22	copy fasta	SLC7A4	chr22	21023718	21037561
SLC7A4_chr22_21023718_21037561	0/0	t0002	409	159	32	23	87	0	17	copy fasta	SLC7A4	chr22	21023718	21037561
SLC7A4_chr22_21023718_21037561	0/1	t0003	409	31	1	14	6	3	6	copy fasta	SLC7A4	chr22	21023718	21037561
SLC7A4_chr22_21023718_21037561	0/0	t0004	409	7	6	1	0	0	0	copy fasta	SLC7A4	chr22	21023718	21037561
SLC7A4_chr22_21023718_21037561	0/0	t0005	409	3	0	3	0	0	0	copy fasta	SLC7A4	chr22	21023718	21037561
SLC7A4_chr22_21023718_21037561	0/0	t0006	409	2	0	2	0	0	0	copy fasta	SLC7A4	chr22	21023718	21037561
SLC7A4_chr22_21023718_21037561	0/0	t0007	409	2	0	2	0	0	0	copy fasta	SLC7A4	chr22	21023718	21037561
SLC7A4_chr22_21023718_21037561	0/0	t0008	409	1	1	0	0	0	0	copy fasta	SLC7A4	chr22	21023718	21037561
SLC7A4_chr22_21023718_21037561	0/0	t0009	409	1	0	0	0	0	1	copy fasta	SLC7A4	chr22	21023718	21037561
SLC7A5_chr16_87825023_87874507	0/0	t0001	3036	99	4	26	59	4	6	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	1/1	t0002	3033	48	3	18	13	4	8	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0003	3032	22	1	2	12	0	7	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0004	3032	21	0	4	14	1	2	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0005	3032	20	2	4	8	2	4	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0006	3033	18	13	0	2	0	3	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0007	3033	12	0	1	3	3	5	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0008	3036	10	9	1	0	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0009	3036	9	0	0	9	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0010	3032	8	7	1	0	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0011	3036	7	0	2	3	1	1	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0012	3034	6	2	3	1	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0013	3032	6	0	0	0	1	5	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0014	3033	6	6	0	0	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0015	3034	6	0	0	6	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0016	3036	6	6	0	0	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0017	3034	5	5	0	0	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0018	3033	4	0	4	0	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0019	3034	3	3	0	0	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0020	3036	3	3	0	0	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0021	3033	3	0	0	3	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0022	3036	3	0	2	0	1	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0023	3033	3	3	0	0	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0024	3032	3	3	0	0	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0025	3032	3	0	1	1	0	1	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0026	3036	2	1	1	0	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0027	3036	2	2	0	0	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0028	3036	2	0	2	0	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0029	3036	2	0	2	0	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0030	3036	2	1	1	0	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0031	3036	2	2	0	0	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0032	3032	2	0	0	0	1	1	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0033	3036	2	0	0	2	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0034	3036	1	1	0	0	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0035	3036	1	1	0	0	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0036	3034	1	1	0	0	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0037	3034	1	1	0	0	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0038	3033	1	0	1	0	0	0	copy fasta	SLC7A5	chr16	87825023	87874507