JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC7A5_chr16_87825023_87874507	0/0	t0039	3033	1	1	0	0	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0040	3036	1	1	0	0	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0041	3036	1	1	0	0	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0042	3033	1	1	0	0	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0043	3034	1	1	0	0	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0044	3034	1	1	0	0	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0045	3034	1	1	0	0	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0046	3032	1	0	0	1	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0047	3032	1	0	0	1	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0048	3032	1	0	1	0	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0049	3034	1	0	0	0	0	1	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0050	3033	1	0	1	0	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0051	3033	1	0	0	1	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0052	3033	1	0	0	1	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0053	3033	1	0	0	1	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0054	3029	1	0	0	1	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0055	3033	1	1	0	0	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0056	3036	1	0	0	1	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0057	3034	1	0	0	1	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0058	3036	1	0	0	0	0	1	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0059	3036	1	0	0	1	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0060	3036	1	0	1	0	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0061	3032	1	0	0	0	0	1	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0062	3036	1	1	0	0	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0063	3036	1	0	1	0	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0064	3033	1	1	0	0	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0065	3033	1	1	0	0	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0066	3036	1	1	0	0	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0067	3036	1	1	0	0	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0068	3045	1	0	0	1	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0069	3036	1	0	0	0	0	1	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0070	3036	1	0	0	1	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0071	3036	1	0	0	1	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0072	3033	1	0	0	0	0	1	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A5_chr16_87825023_87874507	0/0	t0073	3032	1	1	0	0	0	0	copy fasta	SLC7A5	chr16	87825023	87874507
SLC7A6OS_chr16_68293034_68315946	0/1	t0001	3262	153	18	42	59	11	22	copy fasta	SLC7A6OS	chr16	68293034	68315946
SLC7A6OS_chr16_68293034_68315946	1/0	t0002	3262	142	55	28	33	5	20	copy fasta	SLC7A6OS	chr16	68293034	68315946
SLC7A6OS_chr16_68293034_68315946	0/0	t0003	3258	6	6	0	0	0	0	copy fasta	SLC7A6OS	chr16	68293034	68315946
SLC7A6OS_chr16_68293034_68315946	0/0	t0004	3262	4	3	1	0	0	0	copy fasta	SLC7A6OS	chr16	68293034	68315946
SLC7A6OS_chr16_68293034_68315946	0/0	t0005	3262	3	3	0	0	0	0	copy fasta	SLC7A6OS	chr16	68293034	68315946
SLC7A6OS_chr16_68293034_68315946	0/0	t0006	3262	2	0	2	0	0	0	copy fasta	SLC7A6OS	chr16	68293034	68315946
SLC7A6OS_chr16_68293034_68315946	0/0	t0007	3262	2	2	0	0	0	0	copy fasta	SLC7A6OS	chr16	68293034	68315946
SLC7A6OS_chr16_68293034_68315946	0/0	t0008	3262	2	0	0	2	0	0	copy fasta	SLC7A6OS	chr16	68293034	68315946
SLC7A6OS_chr16_68293034_68315946	0/0	t0009	3262	1	1	0	0	0	0	copy fasta	SLC7A6OS	chr16	68293034	68315946
SLC7A6OS_chr16_68293034_68315946	0/0	t0010	3262	1	0	1	0	0	0	copy fasta	SLC7A6OS	chr16	68293034	68315946
SLC7A6OS_chr16_68293034_68315946	0/0	t0011	3262	1	1	0	0	0	0	copy fasta	SLC7A6OS	chr16	68293034	68315946
SLC7A6OS_chr16_68293034_68315946	0/0	t0012	3262	1	1	0	0	0	0	copy fasta	SLC7A6OS	chr16	68293034	68315946
SLC7A6OS_chr16_68293034_68315946	0/0	t0013	3262	1	1	0	0	0	0	copy fasta	SLC7A6OS	chr16	68293034	68315946
SLC7A6OS_chr16_68293034_68315946	0/0	t0014	3262	1	0	0	1	0	0	copy fasta	SLC7A6OS	chr16	68293034	68315946
SLC7A6OS_chr16_68293034_68315946	0/0	t0015	3262	1	1	0	0	0	0	copy fasta	SLC7A6OS	chr16	68293034	68315946