JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC7A6OS_chr16_68293034_68315946	0/0	t0016	3262	1	0	0	1	0	0	copy fasta	SLC7A6OS	chr16	68293034	68315946
SLC7A6OS_chr16_68293034_68315946	0/0	t0017	3262	1	0	0	1	0	0	copy fasta	SLC7A6OS	chr16	68293034	68315946
SLC7A6OS_chr16_68293034_68315946	0/0	t0018	3262	1	0	0	1	0	0	copy fasta	SLC7A6OS	chr16	68293034	68315946
SLC7A6OS_chr16_68293034_68315946	0/0	t0019	3262	1	0	0	1	0	0	copy fasta	SLC7A6OS	chr16	68293034	68315946
SLC7A6OS_chr16_68293034_68315946	0/0	t0020	3262	1	1	0	0	0	0	copy fasta	SLC7A6OS	chr16	68293034	68315946
SLC7A6OS_chr16_68293034_68315946	0/0	t0021	3262	1	0	0	1	0	0	copy fasta	SLC7A6OS	chr16	68293034	68315946
SLC7A6OS_chr16_68293034_68315946	0/0	t0022	3262	1	1	0	0	0	0	copy fasta	SLC7A6OS	chr16	68293034	68315946
SLC7A6_chr16_68259526_68306819	0/1	t0001	4708	117	17	31	45	5	18	copy fasta	SLC7A6	chr16	68259526	68306819
SLC7A6_chr16_68259526_68306819	1/0	t0002	4708	44	1	16	17	2	7	copy fasta	SLC7A6	chr16	68259526	68306819
SLC7A6_chr16_68259526_68306819	0/0	t0003	4708	41	14	5	14	1	7	copy fasta	SLC7A6	chr16	68259526	68306819
SLC7A6_chr16_68259526_68306819	0/0	t0004	4708	31	23	5	0	1	2	copy fasta	SLC7A6	chr16	68259526	68306819
SLC7A6_chr16_68259526_68306819	0/0	t0005	4709	14	10	0	0	0	4	copy fasta	SLC7A6	chr16	68259526	68306819
SLC7A6_chr16_68259526_68306819	0/0	t0006	4704	6	6	0	0	0	0	copy fasta	SLC7A6	chr16	68259526	68306819
SLC7A6_chr16_68259526_68306819	0/0	t0007	4717	4	4	0	0	0	0	copy fasta	SLC7A6	chr16	68259526	68306819
SLC7A6_chr16_68259526_68306819	0/0	t0008	4708	3	3	0	0	0	0	copy fasta	SLC7A6	chr16	68259526	68306819
SLC7A6_chr16_68259526_68306819	0/0	t0009	4708	3	2	1	0	0	0	copy fasta	SLC7A6	chr16	68259526	68306819
SLC7A6_chr16_68259526_68306819	0/0	t0010	4708	2	0	0	2	0	0	copy fasta	SLC7A6	chr16	68259526	68306819
SLC7A6_chr16_68259526_68306819	0/0	t0011	4708	2	0	2	0	0	0	copy fasta	SLC7A6	chr16	68259526	68306819
SLC7A6_chr16_68259526_68306819	0/0	t0012	4708	1	0	0	1	0	0	copy fasta	SLC7A6	chr16	68259526	68306819
SLC7A6_chr16_68259526_68306819	0/0	t0013	4708	1	0	0	1	0	0	copy fasta	SLC7A6	chr16	68259526	68306819
SLC7A6_chr16_68259526_68306819	0/0	t0014	4708	1	0	0	1	0	0	copy fasta	SLC7A6	chr16	68259526	68306819
SLC7A6_chr16_68259526_68306819	0/0	t0015	4708	1	0	0	1	0	0	copy fasta	SLC7A6	chr16	68259526	68306819
SLC7A6_chr16_68259526_68306819	0/0	t0016	4709	1	1	0	0	0	0	copy fasta	SLC7A6	chr16	68259526	68306819
SLC7A6_chr16_68259526_68306819	0/0	t0017	4708	1	0	0	1	0	0	copy fasta	SLC7A6	chr16	68259526	68306819
SLC7A6_chr16_68259526_68306819	0/0	t0018	4708	1	0	0	1	0	0	copy fasta	SLC7A6	chr16	68259526	68306819
SLC7A6_chr16_68259526_68306819	0/0	t0019	4708	1	1	0	0	0	0	copy fasta	SLC7A6	chr16	68259526	68306819
SLC7A6_chr16_68259526_68306819	0/0	t0020	4708	1	0	0	1	0	0	copy fasta	SLC7A6	chr16	68259526	68306819
SLC7A6_chr16_68259526_68306819	0/0	t0021	4708	1	1	0	0	0	0	copy fasta	SLC7A6	chr16	68259526	68306819
SLC7A6_chr16_68259526_68306819	0/0	t0022	4708	1	0	0	0	1	0	copy fasta	SLC7A6	chr16	68259526	68306819
SLC7A6_chr16_68259526_68306819	0/0	t0023	4708	1	1	0	0	0	0	copy fasta	SLC7A6	chr16	68259526	68306819
SLC7A6_chr16_68259526_68306819	0/0	t0024	4708	1	1	0	0	0	0	copy fasta	SLC7A6	chr16	68259526	68306819
SLC7A6_chr16_68259526_68306819	0/0	t0025	4708	1	1	0	0	0	0	copy fasta	SLC7A6	chr16	68259526	68306819
SLC7A6_chr16_68259526_68306819	0/0	t0026	4708	1	0	0	1	0	0	copy fasta	SLC7A6	chr16	68259526	68306819
SLC7A7_chr14_22768222_22820435	0/1	t0001	547	230	41	46	110	9	23	copy fasta	SLC7A7	chr14	22768222	22820435
SLC7A7_chr14_22768222_22820435	1/0	t0002	547	164	47	28	60	5	23	copy fasta	SLC7A7	chr14	22768222	22820435
SLC7A7_chr14_22768222_22820435	0/0	t0003	547	3	3	0	0	0	0	copy fasta	SLC7A7	chr14	22768222	22820435
SLC7A7_chr14_22768222_22820435	0/0	t0004	547	2	2	0	0	0	0	copy fasta	SLC7A7	chr14	22768222	22820435
SLC7A7_chr14_22768222_22820435	0/0	t0005	546	1	1	0	0	0	0	copy fasta	SLC7A7	chr14	22768222	22820435
SLC7A7_chr14_22768222_22820435	0/0	t0006	546	1	1	0	0	0	0	copy fasta	SLC7A7	chr14	22768222	22820435
SLC7A7_chr14_22768222_22820435	0/0	t0007	546	1	1	0	0	0	0	copy fasta	SLC7A7	chr14	22768222	22820435
SLC7A8_chr14_23120295_23188660	0/0	t0001	2631	25	3	7	11	1	3	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0002	2631	24	1	2	13	3	5	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0003	2633	23	2	15	1	1	4	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0004	2631	20	0	0	18	0	2	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0005	2631	15	1	0	10	0	4	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0006	2632	11	0	2	8	0	1	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0007	2629	10	0	1	9	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0008	2632	10	2	8	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0009	2628	9	0	0	9	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0010	2629	9	1	2	5	0	1	copy fasta	SLC7A8	chr14	23120295	23188660