JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC7A8_chr14_23120295_23188660	0/0	t0011	2632	9	0	3	3	0	3	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0012	2631	8	0	0	5	1	2	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0013	2632	8	0	0	8	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0014	2630	8	3	1	4	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0015	2631	8	0	3	3	0	2	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0016	2632	7	0	2	1	0	4	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0017	2630	6	2	0	3	0	1	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0018	2632	6	0	4	0	0	2	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0019	2630	5	5	0	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0020	2631	5	5	0	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0021	2632	5	1	0	4	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0022	2633	5	0	0	5	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0023	2633	5	0	3	1	1	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0024	2629	5	3	0	1	1	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0025	2630	5	3	0	0	2	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0026	2632	5	2	0	3	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/1	t0027	2632	5	1	1	2	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0028	2632	4	0	0	4	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0029	2629	3	3	0	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0030	2628	3	3	0	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0031	2631	3	0	3	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0032	2631	3	3	0	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0033	2633	3	0	0	3	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0034	2628	3	0	1	1	1	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0035	2634	2	1	1	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0036	2629	2	2	0	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0037	2629	2	2	0	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0038	2630	2	2	0	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	1/0	t0039	2629	2	0	0	1	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0040	2631	2	2	0	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0041	2632	2	0	0	2	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0042	2630	2	1	1	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0043	2631	2	0	0	2	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0044	2632	2	0	0	2	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0045	2633	2	0	0	2	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0046	2634	2	0	0	2	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0047	2629	2	0	0	2	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0048	2630	2	2	0	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0049	2630	2	2	0	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0050	2630	2	2	0	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0051	2633	2	2	0	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0052	2634	2	0	0	2	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0053	2631	2	2	0	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0054	2634	2	0	0	2	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0055	2630	2	0	0	2	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0056	2632	2	0	1	0	0	1	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0057	2631	1	0	0	1	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0058	2630	1	1	0	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0059	2630	1	1	0	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0060	2631	1	1	0	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660