JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC7A8_chr14_23120295_23188660	0/0	t0061	2630	1	1	0	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0062	2631	1	1	0	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0063	2629	1	1	0	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0064	2631	1	1	0	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0065	2632	1	1	0	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0066	2630	1	1	0	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0067	2629	1	1	0	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0068	2630	1	0	0	0	0	1	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0069	2631	1	1	0	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0070	2632	1	0	0	1	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0071	2627	1	1	0	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0072	2626	1	0	0	0	0	1	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0073	2631	1	1	0	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0074	2631	1	1	0	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0075	2630	1	1	0	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0076	2632	1	0	0	0	1	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0077	2633	1	1	0	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0078	2630	1	0	0	1	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0079	2631	1	1	0	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0080	2631	1	0	0	1	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0081	2631	1	1	0	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0082	2631	1	1	0	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0083	2631	1	1	0	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0084	2633	1	0	0	1	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0085	2633	1	1	0	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0086	2629	1	0	0	0	0	1	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0087	2631	1	0	0	1	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0088	2632	1	1	0	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0089	2631	1	1	0	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0090	2631	1	0	0	1	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0091	2632	1	0	0	1	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0092	2632	1	0	0	1	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0093	2631	1	0	1	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0094	2629	1	1	0	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0095	2630	1	1	0	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0096	2630	1	1	0	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0097	2630	1	1	0	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0098	2630	1	1	0	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0099	2631	1	1	0	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0100	2628	1	0	0	0	0	1	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0101	2630	1	1	0	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0102	2630	1	0	0	1	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0103	2630	1	1	0	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0104	2631	1	0	0	1	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0105	2631	1	0	0	1	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0106	2630	1	0	0	1	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0107	2633	1	0	1	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0108	2628	1	0	0	0	0	1	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0109	2631	1	0	0	1	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0110	2631	1	0	0	1	0	0	copy fasta	SLC7A8	chr14	23120295	23188660