JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC7A8_chr14_23120295_23188660	0/0	t0111	2632	1	0	1	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0112	2632	1	1	0	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0113	2633	1	1	0	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0114	2634	1	0	0	1	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0115	2632	1	1	0	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0116	2634	1	0	0	1	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0117	2634	1	0	1	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0118	2635	1	0	0	1	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0119	2630	1	1	0	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0120	2632	1	0	1	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A8_chr14_23120295_23188660	0/0	t0121	2632	1	1	0	0	0	0	copy fasta	SLC7A8	chr14	23120295	23188660
SLC7A9_chr19_32825511_32874767	1/0	t0001	303	133	21	18	77	6	10	copy fasta	SLC7A9	chr19	32825511	32874767
SLC7A9_chr19_32825511_32874767	0/1	t0002	303	120	23	29	36	7	24	copy fasta	SLC7A9	chr19	32825511	32874767
SLC7A9_chr19_32825511_32874767	0/0	t0003	303	81	11	8	51	4	7	copy fasta	SLC7A9	chr19	32825511	32874767
SLC7A9_chr19_32825511_32874767	0/0	t0004	303	55	32	3	13	0	7	copy fasta	SLC7A9	chr19	32825511	32874767
SLC7A9_chr19_32825511_32874767	0/0	t0005	303	7	1	2	4	0	0	copy fasta	SLC7A9	chr19	32825511	32874767
SLC7A9_chr19_32825511_32874767	0/0	t0006	303	6	4	0	0	1	1	copy fasta	SLC7A9	chr19	32825511	32874767
SLC7A9_chr19_32825511_32874767	0/0	t0007	303	1	0	0	1	0	0	copy fasta	SLC7A9	chr19	32825511	32874767
SLC7A9_chr19_32825511_32874767	0/0	t0008	303	1	0	0	0	0	1	copy fasta	SLC7A9	chr19	32825511	32874767
SLC8A1_chr2_40092270_40457090	0/0	t0001	18190	14	0	2	10	2	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0002	18189	4	0	0	4	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0003	18201	3	3	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0004	18210	3	3	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0005	18200	3	0	1	2	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0006	18208	3	0	2	1	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0007	18211	3	0	3	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0008	18208	2	1	1	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0009	18199	2	0	0	2	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0010	18191	2	0	0	2	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0011	18191	2	0	0	2	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0012	18217	2	2	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0013	18216	2	0	2	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0014	18216	2	0	0	0	2	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0015	18211	2	2	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0016	18199	2	0	2	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0017	18190	2	0	0	1	0	1	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0018	18207	2	2	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0019	18204	2	0	0	2	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0020	18192	2	2	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0021	18208	2	0	1	1	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0022	18199	2	2	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0023	18193	2	0	0	2	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0024	18208	2	0	1	0	0	1	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0025	18207	2	0	2	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0026	18187	2	2	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0027	18200	1	0	0	1	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0028	18201	1	0	0	1	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0029	18180	1	0	0	1	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0030	18190	1	0	0	1	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0031	18190	1	0	1	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090