JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC8A1_chr2_40092270_40457090	0/0	t0032	18191	1	0	0	1	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0033	18190	1	0	0	0	0	1	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0034	18202	1	0	1	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0035	18208	1	0	0	1	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0036	18190	1	0	0	1	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0037	18184	1	0	0	1	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0038	18190	1	0	0	0	1	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0039	18190	1	0	1	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0040	18194	1	0	0	1	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0041	18200	1	0	1	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0042	18200	1	0	0	1	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0043	18208	1	0	0	0	0	1	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0044	18203	1	0	0	0	0	1	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0045	18190	1	0	1	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0046	18208	1	0	0	0	0	1	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0047	18199	1	1	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0048	18194	1	0	0	1	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0049	18190	1	0	0	1	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0050	18181	1	0	0	1	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0051	18199	1	0	0	1	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0052	18188	1	1	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0053	18212	1	1	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0054	18179	1	1	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0055	18199	1	1	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0056	18202	1	1	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0057	18188	1	1	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0058	18201	1	1	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0059	18195	1	1	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0060	18203	1	1	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0061	18200	1	1	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0062	18206	1	1	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0063	18219	1	1	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0064	18220	1	1	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0065	18195	1	1	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0066	18201	1	0	0	1	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0067	18211	1	1	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0068	18204	1	1	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0069	18193	1	1	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0070	18203	1	1	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0071	18185	1	0	1	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0072	18185	1	1	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0073	18190	1	1	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0074	18187	1	1	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0075	18202	1	1	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0076	18208	1	0	1	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0077	18209	1	0	1	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0078	18207	1	1	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0079	18198	1	0	0	1	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0080	18209	1	1	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0081	18205	1	0	0	0	0	1	copy fasta	SLC8A1	chr2	40092270	40457090