JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
SLC8A1_chr2_40092270_40457090	0/0	t0082	18188	1	1	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0083	18207	1	1	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0084	18207	1	0	1	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0085	18199	1	0	0	0	1	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0086	18200	1	0	0	1	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0087	18208	1	0	1	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0088	18208	1	0	0	1	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0089	18208	1	0	0	1	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0090	18200	1	0	0	1	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0091	18200	1	0	0	1	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0092	18197	1	0	0	1	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0093	18200	1	0	0	1	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0094	18197	1	0	0	1	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0095	18190	1	0	1	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0096	18199	1	0	0	1	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0097	18188	1	1	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0098	18206	1	0	1	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0099	18204	1	0	1	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0100	18214	1	1	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0101	18208	1	1	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0102	18209	1	1	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0103	18213	1	1	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0104	18191	1	1	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0105	18208	1	0	1	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0106	18189	1	1	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0107	18199	1	0	0	0	1	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0108	18200	1	0	0	1	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0109	18201	1	1	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0110	18198	1	1	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0111	18202	1	0	0	1	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0112	18190	1	0	0	1	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0113	18192	1	1	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0114	18220	1	0	1	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0115	18205	1	1	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0116	18191	1	0	1	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0117	18192	1	1	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0118	18204	1	1	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0119	18191	1	0	0	1	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0120	18205	1	0	1	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0121	18212	1	0	0	1	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0122	18198	1	0	1	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0123	18195	1	1	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0124	18194	1	0	0	0	1	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0125	18191	1	1	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0126	18189	1	1	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0127	18186	1	1	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0128	18201	1	0	0	1	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0129	18210	1	1	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0130	18208	1	0	1	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0131	18207	1	1	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090