JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC8A1_chr2_40092270_40457090	0/0	t0132	18209	1	0	0	1	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0133	18212	1	0	0	1	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0134	18188	1	0	0	0	0	1	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0135	18188	1	0	0	0	0	1	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/1	t0136	18208	1	0	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0137	18197	1	1	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0138	18197	1	1	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0139	18209	1	0	1	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0140	18199	1	0	0	1	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0141	18208	1	0	0	1	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0142	18208	1	0	0	1	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0143	18208	1	0	0	1	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0144	18209	1	0	0	1	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0145	18199	1	0	1	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0146	18205	1	0	0	1	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0147	18207	1	0	0	0	0	1	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0148	18208	1	0	0	0	0	1	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0149	18208	1	0	0	0	0	1	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0150	18209	1	0	1	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0151	18210	1	0	1	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0152	18197	1	0	1	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0153	18207	1	0	0	0	1	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0154	18193	1	0	0	1	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0155	18208	1	0	1	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0156	18208	1	0	0	1	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0157	18190	1	1	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0158	18190	1	0	0	1	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0159	18220	1	1	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0160	18215	1	1	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0161	18208	1	0	0	1	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0162	18208	1	0	0	1	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0163	18208	1	0	1	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0164	18209	1	0	0	1	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0165	18188	1	1	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0166	18211	1	1	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0167	18211	1	1	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0168	18188	1	1	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0169	18197	1	1	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0170	18190	1	1	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0171	18206	1	1	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0172	18189	1	1	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0173	18210	1	1	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	1/0	t0174	18195	1	0	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0175	18210	1	1	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0176	18191	1	1	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0177	18209	1	0	0	1	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0178	18210	1	1	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0179	18204	1	1	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0180	18204	1	1	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0181	18199	1	1	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090