JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC8A1_chr2_40092270_40457090	0/0	t0182	18206	1	1	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0183	18209	1	0	0	0	0	1	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0184	18196	1	0	1	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0185	18229	1	1	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0186	18225	1	1	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0187	18213	1	1	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0188	18188	1	1	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0189	18186	1	1	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0190	18191	1	1	0	0	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A1_chr2_40092270_40457090	0/0	t0191	18190	1	0	0	1	0	0	copy fasta	SLC8A1	chr2	40092270	40457090
SLC8A2_chr19_47423017_47476893	0/0	t0001	2194	129	10	30	57	10	22	copy fasta	SLC8A2	chr19	47423017	47476893
SLC8A2_chr19_47423017_47476893	0/0	t0002	2194	68	30	13	21	0	4	copy fasta	SLC8A2	chr19	47423017	47476893
SLC8A2_chr19_47423017_47476893	0/0	t0003	2194	41	15	8	13	2	3	copy fasta	SLC8A2	chr19	47423017	47476893
SLC8A2_chr19_47423017_47476893	0/0	t0004	2195	14	2	3	5	0	4	copy fasta	SLC8A2	chr19	47423017	47476893
SLC8A2_chr19_47423017_47476893	0/0	t0005	2194	10	0	4	4	0	2	copy fasta	SLC8A2	chr19	47423017	47476893
SLC8A2_chr19_47423017_47476893	0/0	t0006	2195	9	7	2	0	0	0	copy fasta	SLC8A2	chr19	47423017	47476893
SLC8A2_chr19_47423017_47476893	0/0	t0007	2194	8	8	0	0	0	0	copy fasta	SLC8A2	chr19	47423017	47476893
SLC8A2_chr19_47423017_47476893	0/0	t0008	2195	6	1	2	2	0	1	copy fasta	SLC8A2	chr19	47423017	47476893
SLC8A2_chr19_47423017_47476893	0/0	t0009	2195	5	3	0	1	0	1	copy fasta	SLC8A2	chr19	47423017	47476893
SLC8A2_chr19_47423017_47476893	0/0	t0010	2194	3	0	2	0	1	0	copy fasta	SLC8A2	chr19	47423017	47476893
SLC8A2_chr19_47423017_47476893	0/0	t0011	2195	3	0	1	2	0	0	copy fasta	SLC8A2	chr19	47423017	47476893
SLC8A2_chr19_47423017_47476893	0/0	t0012	2194	2	2	0	0	0	0	copy fasta	SLC8A2	chr19	47423017	47476893
SLC8A2_chr19_47423017_47476893	0/0	t0013	2195	2	2	0	0	0	0	copy fasta	SLC8A2	chr19	47423017	47476893
SLC8A2_chr19_47423017_47476893	0/0	t0014	2194	2	0	1	0	0	1	copy fasta	SLC8A2	chr19	47423017	47476893
SLC8A2_chr19_47423017_47476893	0/0	t0015	2195	1	1	0	0	0	0	copy fasta	SLC8A2	chr19	47423017	47476893
SLC8A2_chr19_47423017_47476893	0/0	t0016	2194	1	1	0	0	0	0	copy fasta	SLC8A2	chr19	47423017	47476893
SLC8A2_chr19_47423017_47476893	0/0	t0017	2194	1	0	1	0	0	0	copy fasta	SLC8A2	chr19	47423017	47476893
SLC8A2_chr19_47423017_47476893	0/1	t0018	2194	1	0	0	0	0	0	copy fasta	SLC8A2	chr19	47423017	47476893
SLC8A2_chr19_47423017_47476893	0/0	t0019	2194	1	0	0	1	0	0	copy fasta	SLC8A2	chr19	47423017	47476893
SLC8A2_chr19_47423017_47476893	0/0	t0020	2194	1	0	0	1	0	0	copy fasta	SLC8A2	chr19	47423017	47476893
SLC8A2_chr19_47423017_47476893	0/0	t0021	2195	1	1	0	0	0	0	copy fasta	SLC8A2	chr19	47423017	47476893
SLC8A2_chr19_47423017_47476893	0/0	t0022	2195	1	1	0	0	0	0	copy fasta	SLC8A2	chr19	47423017	47476893
SLC8A2_chr19_47423017_47476893	0/0	t0023	2195	1	0	0	0	1	0	copy fasta	SLC8A2	chr19	47423017	47476893
SLC8A2_chr19_47423017_47476893	0/0	t0024	2195	1	1	0	0	0	0	copy fasta	SLC8A2	chr19	47423017	47476893
SLC8A2_chr19_47423017_47476893	1/0	t0025	2194	1	0	0	0	0	0	copy fasta	SLC8A2	chr19	47423017	47476893
SLC8A2_chr19_47423017_47476893	0/0	t0026	2194	1	0	1	0	0	0	copy fasta	SLC8A2	chr19	47423017	47476893
SLC8A2_chr19_47423017_47476893	0/0	t0027	2194	1	0	0	1	0	0	copy fasta	SLC8A2	chr19	47423017	47476893
SLC8A2_chr19_47423017_47476893	0/0	t0028	2194	1	1	0	0	0	0	copy fasta	SLC8A2	chr19	47423017	47476893
SLC8A3_chr14_70039215_70193951	0/0	t0001	2368	73	9	17	27	6	14	copy fasta	SLC8A3	chr14	70039215	70193951
SLC8A3_chr14_70039215_70193951	0/0	t0002	2368	41	0	5	34	1	1	copy fasta	SLC8A3	chr14	70039215	70193951
SLC8A3_chr14_70039215_70193951	0/0	t0003	2367	19	12	7	0	0	0	copy fasta	SLC8A3	chr14	70039215	70193951
SLC8A3_chr14_70039215_70193951	0/0	t0004	2367	17	2	5	6	3	1	copy fasta	SLC8A3	chr14	70039215	70193951
SLC8A3_chr14_70039215_70193951	0/0	t0005	2367	10	2	2	2	0	4	copy fasta	SLC8A3	chr14	70039215	70193951
SLC8A3_chr14_70039215_70193951	0/0	t0006	2368	8	1	1	0	4	2	copy fasta	SLC8A3	chr14	70039215	70193951
SLC8A3_chr14_70039215_70193951	0/0	t0007	2369	8	0	1	6	0	1	copy fasta	SLC8A3	chr14	70039215	70193951
SLC8A3_chr14_70039215_70193951	0/0	t0008	2367	6	1	1	2	2	0	copy fasta	SLC8A3	chr14	70039215	70193951
SLC8A3_chr14_70039215_70193951	0/0	t0009	2369	6	0	0	6	0	0	copy fasta	SLC8A3	chr14	70039215	70193951
SLC8A3_chr14_70039215_70193951	0/0	t0010	2368	6	4	1	0	0	1	copy fasta	SLC8A3	chr14	70039215	70193951
SLC8A3_chr14_70039215_70193951	0/0	t0011	2368	5	2	0	0	0	3	copy fasta	SLC8A3	chr14	70039215	70193951
SLC8A3_chr14_70039215_70193951	0/0	t0012	2369	4	0	1	3	0	0	copy fasta	SLC8A3	chr14	70039215	70193951