Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BDH1_chr3_197504783_197560968	0/0	t0053	2445	1	0	1	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0054	2507	1	1	0	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0055	2493	1	1	0	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0056	2424	1	1	0	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0057	2430	1	0	0	0	0	1	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0058	2424	1	0	0	1	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0059	2496	1	1	0	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0060	2474	1	1	0	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0061	2471	1	1	0	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0062	2463	1	1	0	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0063	2491	1	1	0	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0064	2491	1	1	0	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0065	2490	1	1	0	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0066	2486	1	1	0	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0067	2486	1	1	0	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0068	2480	1	1	0	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0069	2472	1	1	0	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0070	2470	1	1	0	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0071	2493	1	1	0	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0072	2510	1	0	0	0	0	1	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0073	2505	1	0	1	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0074	2503	1	0	1	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0075	2513	1	0	1	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0076	2490	1	1	0	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0077	2479	1	1	0	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0078	2471	1	0	1	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0079	2453	1	0	1	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0080	2513	1	1	0	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0081	2512	1	0	0	1	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0082	2496	1	0	1	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0083	2530	1	0	0	1	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0084	2516	1	0	0	1	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0085	2494	1	0	0	1	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0086	2486	1	0	0	1	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0087	2519	1	1	0	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0088	2505	1	1	0	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0089	2503	1	1	0	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0090	2499	1	1	0	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0091	2462	1	0	1	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0092	2513	1	0	1	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0093	2510	1	0	0	1	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0094	2509	1	1	0	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0095	2493	1	0	1	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0096	2505	1	1	0	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0097	2491	1	1	0	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0098	2455	1	1	0	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0099	2447	1	0	0	0	1	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0100	2443	1	0	0	0	0	1	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0101	2440	1	0	0	0	0	1	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0102	2437	1	0	1	0	0	0	copy fasta	BDH1	chr3	197504783	197560968