JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC8A3_chr14_70039215_70193951	0/0	t0063	2367	1	0	0	1	0	0	copy fasta	SLC8A3	chr14	70039215	70193951
SLC8A3_chr14_70039215_70193951	0/0	t0064	2368	1	0	1	0	0	0	copy fasta	SLC8A3	chr14	70039215	70193951
SLC8A3_chr14_70039215_70193951	0/0	t0065	2367	1	1	0	0	0	0	copy fasta	SLC8A3	chr14	70039215	70193951
SLC8A3_chr14_70039215_70193951	0/0	t0066	2367	1	1	0	0	0	0	copy fasta	SLC8A3	chr14	70039215	70193951
SLC8A3_chr14_70039215_70193951	0/0	t0067	2367	1	1	0	0	0	0	copy fasta	SLC8A3	chr14	70039215	70193951
SLC8A3_chr14_70039215_70193951	0/0	t0068	2368	1	1	0	0	0	0	copy fasta	SLC8A3	chr14	70039215	70193951
SLC8A3_chr14_70039215_70193951	0/0	t0069	2367	1	0	1	0	0	0	copy fasta	SLC8A3	chr14	70039215	70193951
SLC8A3_chr14_70039215_70193951	0/0	t0070	2368	1	0	1	0	0	0	copy fasta	SLC8A3	chr14	70039215	70193951
SLC8A3_chr14_70039215_70193951	0/0	t0071	2368	1	1	0	0	0	0	copy fasta	SLC8A3	chr14	70039215	70193951
SLC8A3_chr14_70039215_70193951	0/0	t0072	2367	1	0	1	0	0	0	copy fasta	SLC8A3	chr14	70039215	70193951
SLC8A3_chr14_70039215_70193951	0/0	t0073	2368	1	1	0	0	0	0	copy fasta	SLC8A3	chr14	70039215	70193951
SLC8A3_chr14_70039215_70193951	0/0	t0074	2367	1	1	0	0	0	0	copy fasta	SLC8A3	chr14	70039215	70193951
SLC8A3_chr14_70039215_70193951	0/0	t0075	2367	1	0	1	0	0	0	copy fasta	SLC8A3	chr14	70039215	70193951
SLC8A3_chr14_70039215_70193951	0/0	t0076	2369	1	0	0	1	0	0	copy fasta	SLC8A3	chr14	70039215	70193951
SLC8A3_chr14_70039215_70193951	0/0	t0077	2368	1	0	1	0	0	0	copy fasta	SLC8A3	chr14	70039215	70193951
SLC8A3_chr14_70039215_70193951	0/1	t0078	2367	1	0	0	0	0	0	copy fasta	SLC8A3	chr14	70039215	70193951
SLC8B1_chr12_113293771_113340109	1/1	t0001	1756	130	21	22	55	8	22	copy fasta	SLC8B1	chr12	113293771	113340109
SLC8B1_chr12_113293771_113340109	0/0	t0002	1757	53	1	1	48	0	3	copy fasta	SLC8B1	chr12	113293771	113340109
SLC8B1_chr12_113293771_113340109	0/0	t0003	1758	38	24	6	3	2	3	copy fasta	SLC8B1	chr12	113293771	113340109
SLC8B1_chr12_113293771_113340109	0/0	t0004	1756	28	19	4	0	1	4	copy fasta	SLC8B1	chr12	113293771	113340109
SLC8B1_chr12_113293771_113340109	0/0	t0005	1756	5	5	0	0	0	0	copy fasta	SLC8B1	chr12	113293771	113340109
SLC8B1_chr12_113293771_113340109	0/0	t0006	1757	5	5	0	0	0	0	copy fasta	SLC8B1	chr12	113293771	113340109
SLC8B1_chr12_113293771_113340109	0/0	t0007	1757	4	4	0	0	0	0	copy fasta	SLC8B1	chr12	113293771	113340109
SLC8B1_chr12_113293771_113340109	0/0	t0008	1758	4	4	0	0	0	0	copy fasta	SLC8B1	chr12	113293771	113340109
SLC8B1_chr12_113293771_113340109	0/0	t0009	1757	3	1	1	0	1	0	copy fasta	SLC8B1	chr12	113293771	113340109
SLC8B1_chr12_113293771_113340109	0/0	t0010	1757	2	2	0	0	0	0	copy fasta	SLC8B1	chr12	113293771	113340109
SLC8B1_chr12_113293771_113340109	0/0	t0011	1757	1	1	0	0	0	0	copy fasta	SLC8B1	chr12	113293771	113340109
SLC8B1_chr12_113293771_113340109	0/0	t0012	1756	1	1	0	0	0	0	copy fasta	SLC8B1	chr12	113293771	113340109
SLC8B1_chr12_113293771_113340109	0/0	t0013	1757	1	0	1	0	0	0	copy fasta	SLC8B1	chr12	113293771	113340109
SLC8B1_chr12_113293771_113340109	0/0	t0014	1758	1	1	0	0	0	0	copy fasta	SLC8B1	chr12	113293771	113340109
SLC8B1_chr12_113293771_113340109	0/0	t0015	1756	1	0	0	0	0	1	copy fasta	SLC8B1	chr12	113293771	113340109
SLC8B1_chr12_113293771_113340109	0/0	t0016	1756	1	0	0	0	0	1	copy fasta	SLC8B1	chr12	113293771	113340109
SLC8B1_chr12_113293771_113340109	0/0	t0017	1758	1	1	0	0	0	0	copy fasta	SLC8B1	chr12	113293771	113340109
SLC8B1_chr12_113293771_113340109	0/0	t0018	1757	1	1	0	0	0	0	copy fasta	SLC8B1	chr12	113293771	113340109
SLC8B1_chr12_113293771_113340109	0/0	t0019	1758	1	0	1	0	0	0	copy fasta	SLC8B1	chr12	113293771	113340109
SLC8B1_chr12_113293771_113340109	0/0	t0020	1756	1	0	0	1	0	0	copy fasta	SLC8B1	chr12	113293771	113340109
SLC8B1_chr12_113293771_113340109	0/0	t0021	1758	1	1	0	0	0	0	copy fasta	SLC8B1	chr12	113293771	113340109
SLC8B1_chr12_113293771_113340109	0/0	t0022	1756	1	0	0	1	0	0	copy fasta	SLC8B1	chr12	113293771	113340109
SLC9A1_chr1_27093809_27160125	0/0	t0001	2290	132	43	25	30	7	27	copy fasta	SLC9A1	chr1	27093809	27160125
SLC9A1_chr1_27093809_27160125	0/1	t0002	2290	62	18	14	15	5	9	copy fasta	SLC9A1	chr1	27093809	27160125
SLC9A1_chr1_27093809_27160125	0/0	t0003	2287	10	7	3	0	0	0	copy fasta	SLC9A1	chr1	27093809	27160125
SLC9A1_chr1_27093809_27160125	0/0	t0004	2290	7	4	2	0	1	0	copy fasta	SLC9A1	chr1	27093809	27160125
SLC9A1_chr1_27093809_27160125	0/0	t0005	2290	6	0	0	6	0	0	copy fasta	SLC9A1	chr1	27093809	27160125
SLC9A1_chr1_27093809_27160125	0/0	t0006	2290	4	1	0	1	0	2	copy fasta	SLC9A1	chr1	27093809	27160125
SLC9A1_chr1_27093809_27160125	1/0	t0007	2290	3	0	1	0	1	0	copy fasta	SLC9A1	chr1	27093809	27160125
SLC9A1_chr1_27093809_27160125	0/0	t0008	2290	3	0	0	3	0	0	copy fasta	SLC9A1	chr1	27093809	27160125
SLC9A1_chr1_27093809_27160125	0/0	t0009	2290	1	1	0	0	0	0	copy fasta	SLC9A1	chr1	27093809	27160125
SLC9A1_chr1_27093809_27160125	0/0	t0010	2290	1	1	0	0	0	0	copy fasta	SLC9A1	chr1	27093809	27160125
SLC9A1_chr1_27093809_27160125	0/0	t0011	2290	1	0	0	1	0	0	copy fasta	SLC9A1	chr1	27093809	27160125
SLC9A1_chr1_27093809_27160125	0/0	t0012	2290	1	1	0	0	0	0	copy fasta	SLC9A1	chr1	27093809	27160125