JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC9A1_chr1_27093809_27160125	0/0	t0013	2290	1	0	1	0	0	0	copy fasta	SLC9A1	chr1	27093809	27160125
SLC9A1_chr1_27093809_27160125	0/0	t0014	2290	1	1	0	0	0	0	copy fasta	SLC9A1	chr1	27093809	27160125
SLC9A1_chr1_27093809_27160125	0/0	t0015	2290	1	1	0	0	0	0	copy fasta	SLC9A1	chr1	27093809	27160125
SLC9A2_chr2_102614553_102716355	0/0	t0001	3163	178	21	30	100	3	24	copy fasta	SLC9A2	chr2	102614553	102716355
SLC9A2_chr2_102614553_102716355	1/0	t0002	3163	73	16	11	30	4	11	copy fasta	SLC9A2	chr2	102614553	102716355
SLC9A2_chr2_102614553_102716355	0/1	t0003	3161	32	9	16	0	2	4	copy fasta	SLC9A2	chr2	102614553	102716355
SLC9A2_chr2_102614553_102716355	0/0	t0004	3159	5	4	1	0	0	0	copy fasta	SLC9A2	chr2	102614553	102716355
SLC9A2_chr2_102614553_102716355	0/0	t0005	3163	5	5	0	0	0	0	copy fasta	SLC9A2	chr2	102614553	102716355
SLC9A2_chr2_102614553_102716355	0/0	t0006	3163	5	3	2	0	0	0	copy fasta	SLC9A2	chr2	102614553	102716355
SLC9A2_chr2_102614553_102716355	0/0	t0007	3163	4	4	0	0	0	0	copy fasta	SLC9A2	chr2	102614553	102716355
SLC9A2_chr2_102614553_102716355	0/0	t0008	3163	3	3	0	0	0	0	copy fasta	SLC9A2	chr2	102614553	102716355
SLC9A2_chr2_102614553_102716355	0/0	t0009	3163	3	0	0	2	0	1	copy fasta	SLC9A2	chr2	102614553	102716355
SLC9A2_chr2_102614553_102716355	0/0	t0010	3163	3	0	3	0	0	0	copy fasta	SLC9A2	chr2	102614553	102716355
SLC9A2_chr2_102614553_102716355	0/0	t0011	3163	3	3	0	0	0	0	copy fasta	SLC9A2	chr2	102614553	102716355
SLC9A2_chr2_102614553_102716355	0/0	t0012	3163	2	2	0	0	0	0	copy fasta	SLC9A2	chr2	102614553	102716355
SLC9A2_chr2_102614553_102716355	0/0	t0013	3163	2	2	0	0	0	0	copy fasta	SLC9A2	chr2	102614553	102716355
SLC9A2_chr2_102614553_102716355	0/0	t0014	3163	2	0	0	2	0	0	copy fasta	SLC9A2	chr2	102614553	102716355
SLC9A2_chr2_102614553_102716355	0/0	t0015	3159	2	2	0	0	0	0	copy fasta	SLC9A2	chr2	102614553	102716355
SLC9A2_chr2_102614553_102716355	0/0	t0016	3161	2	1	1	0	0	0	copy fasta	SLC9A2	chr2	102614553	102716355
SLC9A2_chr2_102614553_102716355	0/0	t0017	3163	1	1	0	0	0	0	copy fasta	SLC9A2	chr2	102614553	102716355
SLC9A2_chr2_102614553_102716355	0/0	t0018	3163	1	1	0	0	0	0	copy fasta	SLC9A2	chr2	102614553	102716355
SLC9A2_chr2_102614553_102716355	0/0	t0019	3163	1	0	0	0	0	1	copy fasta	SLC9A2	chr2	102614553	102716355
SLC9A2_chr2_102614553_102716355	0/0	t0020	3159	1	1	0	0	0	0	copy fasta	SLC9A2	chr2	102614553	102716355
SLC9A2_chr2_102614553_102716355	0/0	t0021	3163	1	1	0	0	0	0	copy fasta	SLC9A2	chr2	102614553	102716355
SLC9A2_chr2_102614553_102716355	0/0	t0022	3163	1	1	0	0	0	0	copy fasta	SLC9A2	chr2	102614553	102716355
SLC9A2_chr2_102614553_102716355	0/0	t0023	3161	1	1	0	0	0	0	copy fasta	SLC9A2	chr2	102614553	102716355
SLC9A2_chr2_102614553_102716355	0/0	t0024	3161	1	1	0	0	0	0	copy fasta	SLC9A2	chr2	102614553	102716355
SLC9A2_chr2_102614553_102716355	0/0	t0025	3163	1	1	0	0	0	0	copy fasta	SLC9A2	chr2	102614553	102716355
SLC9A2_chr2_102614553_102716355	0/0	t0026	3163	1	0	1	0	0	0	copy fasta	SLC9A2	chr2	102614553	102716355
SLC9A2_chr2_102614553_102716355	0/0	t0027	3163	1	0	1	0	0	0	copy fasta	SLC9A2	chr2	102614553	102716355
SLC9A2_chr2_102614553_102716355	0/0	t0028	3163	1	1	0	0	0	0	copy fasta	SLC9A2	chr2	102614553	102716355
SLC9A2_chr2_102614553_102716355	0/0	t0029	3163	1	0	0	1	0	0	copy fasta	SLC9A2	chr2	102614553	102716355
SLC9A2_chr2_102614553_102716355	0/0	t0030	3163	1	0	0	0	0	1	copy fasta	SLC9A2	chr2	102614553	102716355
SLC9A2_chr2_102614553_102716355	0/0	t0031	3159	1	1	0	0	0	0	copy fasta	SLC9A2	chr2	102614553	102716355
SLC9A2_chr2_102614553_102716355	0/0	t0032	3163	1	0	0	1	0	0	copy fasta	SLC9A2	chr2	102614553	102716355
SLC9A2_chr2_102614553_102716355	0/0	t0033	3163	1	0	0	0	1	0	copy fasta	SLC9A2	chr2	102614553	102716355
SLC9A2_chr2_102614553_102716355	0/0	t0034	3163	1	1	0	0	0	0	copy fasta	SLC9A2	chr2	102614553	102716355
SLC9A2_chr2_102614553_102716355	0/0	t0035	3163	1	1	0	0	0	0	copy fasta	SLC9A2	chr2	102614553	102716355
SLC9A2_chr2_102614553_102716355	0/0	t0036	3161	1	1	0	0	0	0	copy fasta	SLC9A2	chr2	102614553	102716355
SLC9A3_chr5_465456_529449	0/0	t0001	3069	72	28	11	26	2	5	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	1/0	t0002	3051	31	2	8	15	2	3	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/0	t0003	3051	26	0	1	23	0	2	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/0	t0004	3087	15	6	4	5	0	0	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/0	t0005	3069	13	3	1	7	1	1	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/0	t0006	3051	9	3	4	2	0	0	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/0	t0007	3051	8	2	2	3	1	0	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/0	t0008	3051	7	0	4	0	1	2	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/1	t0009	3051	4	0	0	0	2	1	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/0	t0010	3069	3	3	0	0	0	0	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/0	t0011	3105	3	1	1	1	0	0	copy fasta	SLC9A3	chr5	465456	529449