JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC9A3_chr5_465456_529449	0/0	t0012	3051	3	0	2	1	0	0	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/0	t0013	3051	2	2	0	0	0	0	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/0	t0014	3051	2	2	0	0	0	0	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/0	t0015	3051	2	0	1	0	1	0	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/0	t0016	3051	1	1	0	0	0	0	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/0	t0017	3087	1	1	0	0	0	0	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/0	t0018	3069	1	1	0	0	0	0	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/0	t0019	3051	1	0	0	1	0	0	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/0	t0020	3051	1	0	0	1	0	0	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/0	t0021	3051	1	1	0	0	0	0	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/0	t0022	3051	1	0	0	1	0	0	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/0	t0023	3069	1	0	1	0	0	0	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/0	t0024	3069	1	1	0	0	0	0	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/0	t0025	3051	1	1	0	0	0	0	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/0	t0026	3051	1	0	1	0	0	0	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/0	t0027	3087	1	1	0	0	0	0	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/0	t0028	3051	1	0	0	1	0	0	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/0	t0029	3051	1	0	1	0	0	0	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/0	t0030	3051	1	0	0	1	0	0	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/0	t0031	3069	1	0	0	1	0	0	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/0	t0032	3087	1	0	0	1	0	0	copy fasta	SLC9A3	chr5	465456	529449
SLC9A3_chr5_465456_529449	0/0	t0033	3105	1	1	0	0	0	0	copy fasta	SLC9A3	chr5	465456	529449
SLC9A4_chr2_102468226_102538972	0/0	t0001	1819	86	7	7	60	1	11	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	1/1	t0002	1819	82	0	14	55	2	9	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	t0003	1819	59	20	21	3	3	12	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	t0004	1818	33	6	0	26	0	1	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	t0005	1818	20	6	4	4	1	5	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	t0006	1819	14	1	5	2	3	3	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	t0007	1819	10	3	4	1	2	0	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	t0008	1819	10	10	0	0	0	0	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	t0009	1819	8	1	3	3	0	1	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	t0010	1818	8	5	1	2	0	0	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	t0011	1810	3	2	1	0	0	0	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	t0012	1819	3	3	0	0	0	0	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	t0013	1819	3	3	0	0	0	0	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	t0014	1822	3	2	1	0	0	0	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	t0015	1819	3	0	0	3	0	0	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	t0016	1819	3	3	0	0	0	0	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	t0017	1819	2	2	0	0	0	0	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	t0018	1819	2	2	0	0	0	0	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	t0019	1822	2	2	0	0	0	0	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	t0020	1822	2	1	0	0	0	1	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	t0021	1819	2	2	0	0	0	0	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	t0022	1819	2	0	0	2	0	0	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	t0023	1819	1	0	0	1	0	0	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	t0024	1819	1	1	0	0	0	0	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	t0025	1819	1	1	0	0	0	0	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	t0026	1822	1	1	0	0	0	0	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	t0027	1819	1	1	0	0	0	0	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	t0028	1819	1	0	1	0	0	0	copy fasta	SLC9A4	chr2	102468226	102538972