JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC9A4_chr2_102468226_102538972	0/0	t0029	1818	1	0	0	1	0	0	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	t0030	1819	1	0	0	0	0	1	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	t0031	1819	1	0	0	1	0	0	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	t0032	1819	1	0	0	1	0	0	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	t0033	1819	1	1	0	0	0	0	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	t0034	1819	1	0	0	1	0	0	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	t0035	1819	1	1	0	0	0	0	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	t0036	1819	1	1	0	0	0	0	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	t0037	1819	1	1	0	0	0	0	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	t0038	1822	1	1	0	0	0	0	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	t0039	1822	1	1	0	0	0	0	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	t0040	1819	1	1	0	0	0	0	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	t0041	1821	1	0	1	0	0	0	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	t0042	1819	1	1	0	0	0	0	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	t0043	1819	1	1	0	0	0	0	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A4_chr2_102468226_102538972	0/0	t0044	1819	1	0	1	0	0	0	copy fasta	SLC9A4	chr2	102468226	102538972
SLC9A5_chr16_67243979_67277191	1/1	t0001	1018	123	21	31	32	10	27	copy fasta	SLC9A5	chr16	67243979	67277191
SLC9A5_chr16_67243979_67277191	0/0	t0002	1018	77	58	5	6	2	6	copy fasta	SLC9A5	chr16	67243979	67277191
SLC9A5_chr16_67243979_67277191	0/0	t0003	1018	1	0	0	0	0	1	copy fasta	SLC9A5	chr16	67243979	67277191
SLC9A5_chr16_67243979_67277191	0/0	t0004	1018	1	0	0	1	0	0	copy fasta	SLC9A5	chr16	67243979	67277191
SLC9A5_chr16_67243979_67277191	0/0	t0005	1018	1	0	0	1	0	0	copy fasta	SLC9A5	chr16	67243979	67277191
SLC9A5_chr16_67243979_67277191	0/0	t0006	1018	1	1	0	0	0	0	copy fasta	SLC9A5	chr16	67243979	67277191
SLC9A6_chrX_135980435_136052269	1/1	t0001	2645	140	17	29	69	4	19	copy fasta	SLC9A6	chrX	135980435	136052269
SLC9A6_chrX_135980435_136052269	0/0	t0002	2646	20	0	0	19	0	1	copy fasta	SLC9A6	chrX	135980435	136052269
SLC9A6_chrX_135980435_136052269	0/0	t0003	2645	9	8	1	0	0	0	copy fasta	SLC9A6	chrX	135980435	136052269
SLC9A6_chrX_135980435_136052269	0/0	t0004	2645	9	8	1	0	0	0	copy fasta	SLC9A6	chrX	135980435	136052269
SLC9A6_chrX_135980435_136052269	0/0	t0005	2645	6	4	1	0	0	1	copy fasta	SLC9A6	chrX	135980435	136052269
SLC9A6_chrX_135980435_136052269	0/0	t0006	2645	3	3	0	0	0	0	copy fasta	SLC9A6	chrX	135980435	136052269
SLC9A6_chrX_135980435_136052269	0/0	t0007	2643	3	3	0	0	0	0	copy fasta	SLC9A6	chrX	135980435	136052269
SLC9A6_chrX_135980435_136052269	0/0	t0008	2645	2	0	0	2	0	0	copy fasta	SLC9A6	chrX	135980435	136052269
SLC9A6_chrX_135980435_136052269	0/0	t0009	2645	2	0	0	0	1	1	copy fasta	SLC9A6	chrX	135980435	136052269
SLC9A6_chrX_135980435_136052269	0/0	t0010	2645	1	1	0	0	0	0	copy fasta	SLC9A6	chrX	135980435	136052269
SLC9A6_chrX_135980435_136052269	0/0	t0011	2645	1	1	0	0	0	0	copy fasta	SLC9A6	chrX	135980435	136052269
SLC9A6_chrX_135980435_136052269	0/0	t0012	2646	1	0	1	0	0	0	copy fasta	SLC9A6	chrX	135980435	136052269
SLC9A6_chrX_135980435_136052269	0/0	t0013	2645	1	1	0	0	0	0	copy fasta	SLC9A6	chrX	135980435	136052269
SLC9A6_chrX_135980435_136052269	0/0	t0014	2645	1	0	0	1	0	0	copy fasta	SLC9A6	chrX	135980435	136052269
SLC9A7_chrX_46594251_46764118	0/0	t0001	7792	69	11	13	35	3	7	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/1	t0002	7791	49	1	12	29	3	3	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	t0003	7790	14	1	8	0	1	4	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	t0004	7792	14	0	3	10	1	0	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	t0005	7791	11	1	0	5	1	4	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	t0006	7790	10	7	3	0	0	0	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	t0007	7793	7	7	0	0	0	0	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	t0008	7791	4	4	0	0	0	0	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	t0009	7793	3	3	0	0	0	0	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	t0010	7791	3	3	0	0	0	0	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	t0011	7793	3	3	0	0	0	0	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	t0012	7792	3	0	0	2	0	1	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	t0013	7791	3	0	0	3	0	0	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	t0014	7791	3	0	3	0	0	0	copy fasta	SLC9A7	chrX	46594251	46764118