JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC9A7_chrX_46594251_46764118	0/0	t0015	7795	3	0	1	2	0	0	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	t0016	7792	2	2	0	0	0	0	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	t0017	7791	2	2	0	0	0	0	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	t0018	7793	2	2	0	0	0	0	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	t0019	7791	2	0	0	0	0	2	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	t0020	7792	2	2	0	0	0	0	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	t0021	7793	2	0	0	2	0	0	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	t0022	7792	1	1	0	0	0	0	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	t0023	7791	1	1	0	0	0	0	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	t0024	7792	1	1	0	0	0	0	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	t0025	7791	1	1	0	0	0	0	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	t0026	7792	1	1	0	0	0	0	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	t0027	7787	1	0	1	0	0	0	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	t0028	7791	1	0	0	1	0	0	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	t0029	7793	1	1	0	0	0	0	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	t0030	7794	1	1	0	0	0	0	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	t0031	7791	1	0	0	0	0	1	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	t0032	7790	1	0	1	0	0	0	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	t0033	7790	1	0	0	1	0	0	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	t0034	7789	1	0	1	0	0	0	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	t0035	7789	1	0	1	0	0	0	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	t0036	7793	1	1	0	0	0	0	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	t0037	7792	1	0	0	1	0	0	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	t0038	7791	1	0	0	0	0	1	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	t0039	7791	1	0	0	1	0	0	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	1/0	t0040	7791	1	0	0	0	0	0	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	t0041	7786	1	0	0	0	0	1	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	t0042	7791	1	0	0	1	0	0	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	t0043	7790	1	0	1	0	0	0	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	t0044	7791	1	0	0	1	0	0	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	t0045	7790	1	1	0	0	0	0	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	t0046	7789	1	0	0	1	0	0	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	t0047	7791	1	0	0	1	0	0	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	t0048	7792	1	0	0	1	0	0	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	t0049	7790	1	0	1	0	0	0	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	t0050	7790	1	1	0	0	0	0	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	t0051	7790	1	0	0	0	0	1	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	t0052	7792	1	0	0	1	0	0	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	t0053	7791	1	0	0	1	0	0	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	t0054	7793	1	0	0	0	0	1	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	t0055	7791	1	0	0	0	0	1	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	t0056	7792	1	0	1	0	0	0	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	t0057	7792	1	0	1	0	0	0	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	t0058	7791	1	1	0	0	0	0	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	t0059	7792	1	0	0	0	0	1	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A7_chrX_46594251_46764118	0/0	t0060	7790	1	0	0	1	0	0	copy fasta	SLC9A7	chrX	46594251	46764118
SLC9A8_chr20_49807828_49897242	1/0	t0001	4402	163	34	37	73	5	13	copy fasta	SLC9A8	chr20	49807828	49897242
SLC9A8_chr20_49807828_49897242	0/0	t0002	4402	51	1	2	48	0	0	copy fasta	SLC9A8	chr20	49807828	49897242
SLC9A8_chr20_49807828_49897242	0/1	t0003	4402	45	14	9	12	5	4	copy fasta	SLC9A8	chr20	49807828	49897242
SLC9A8_chr20_49807828_49897242	0/0	t0004	4402	20	1	2	17	0	0	copy fasta	SLC9A8	chr20	49807828	49897242