JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC9A8_chr20_49807828_49897242	0/0	t0005	4399	18	5	4	6	0	3	copy fasta	SLC9A8	chr20	49807828	49897242
SLC9A8_chr20_49807828_49897242	0/0	t0006	4402	12	4	1	6	0	1	copy fasta	SLC9A8	chr20	49807828	49897242
SLC9A8_chr20_49807828_49897242	0/0	t0007	4402	5	5	0	0	0	0	copy fasta	SLC9A8	chr20	49807828	49897242
SLC9A8_chr20_49807828_49897242	0/0	t0008	4402	4	4	0	0	0	0	copy fasta	SLC9A8	chr20	49807828	49897242
SLC9A8_chr20_49807828_49897242	0/0	t0009	4402	3	3	0	0	0	0	copy fasta	SLC9A8	chr20	49807828	49897242
SLC9A8_chr20_49807828_49897242	0/0	t0010	4399	3	3	0	0	0	0	copy fasta	SLC9A8	chr20	49807828	49897242
SLC9A8_chr20_49807828_49897242	0/0	t0011	4402	2	2	0	0	0	0	copy fasta	SLC9A8	chr20	49807828	49897242
SLC9A8_chr20_49807828_49897242	0/0	t0012	4402	2	2	0	0	0	0	copy fasta	SLC9A8	chr20	49807828	49897242
SLC9A8_chr20_49807828_49897242	0/0	t0013	4402	2	2	0	0	0	0	copy fasta	SLC9A8	chr20	49807828	49897242
SLC9A8_chr20_49807828_49897242	0/0	t0014	4399	2	0	1	0	1	0	copy fasta	SLC9A8	chr20	49807828	49897242
SLC9A8_chr20_49807828_49897242	0/0	t0015	4402	2	0	0	0	1	1	copy fasta	SLC9A8	chr20	49807828	49897242
SLC9A8_chr20_49807828_49897242	0/0	t0016	4402	2	0	0	0	2	0	copy fasta	SLC9A8	chr20	49807828	49897242
SLC9A8_chr20_49807828_49897242	0/0	t0017	4402	1	0	1	0	0	0	copy fasta	SLC9A8	chr20	49807828	49897242
SLC9A8_chr20_49807828_49897242	0/0	t0018	4402	1	1	0	0	0	0	copy fasta	SLC9A8	chr20	49807828	49897242
SLC9A8_chr20_49807828_49897242	0/0	t0019	4402	1	0	0	1	0	0	copy fasta	SLC9A8	chr20	49807828	49897242
SLC9A8_chr20_49807828_49897242	0/0	t0020	4402	1	1	0	0	0	0	copy fasta	SLC9A8	chr20	49807828	49897242
SLC9A8_chr20_49807828_49897242	0/0	t0021	4402	1	0	1	0	0	0	copy fasta	SLC9A8	chr20	49807828	49897242
SLC9A8_chr20_49807828_49897242	0/0	t0022	4402	1	1	0	0	0	0	copy fasta	SLC9A8	chr20	49807828	49897242
SLC9A8_chr20_49807828_49897242	0/0	t0023	4402	1	0	0	0	0	1	copy fasta	SLC9A8	chr20	49807828	49897242
SLC9A8_chr20_49807828_49897242	0/0	t0024	4402	1	0	0	1	0	0	copy fasta	SLC9A8	chr20	49807828	49897242
SLC9A8_chr20_49807828_49897242	0/0	t0025	4402	1	0	0	1	0	0	copy fasta	SLC9A8	chr20	49807828	49897242
SLC9A8_chr20_49807828_49897242	0/0	t0026	4402	1	0	0	1	0	0	copy fasta	SLC9A8	chr20	49807828	49897242
SLC9A8_chr20_49807828_49897242	0/0	t0027	4402	1	0	0	1	0	0	copy fasta	SLC9A8	chr20	49807828	49897242
SLC9A8_chr20_49807828_49897242	0/0	t0028	4402	1	0	0	1	0	0	copy fasta	SLC9A8	chr20	49807828	49897242
SLC9A8_chr20_49807828_49897242	0/0	t0029	4402	1	1	0	0	0	0	copy fasta	SLC9A8	chr20	49807828	49897242
SLC9A8_chr20_49807828_49897242	0/0	t0030	4402	1	1	0	0	0	0	copy fasta	SLC9A8	chr20	49807828	49897242
SLC9A8_chr20_49807828_49897242	0/0	t0031	4402	1	1	0	0	0	0	copy fasta	SLC9A8	chr20	49807828	49897242
SLC9A8_chr20_49807828_49897242	0/0	t0032	4402	1	0	0	1	0	0	copy fasta	SLC9A8	chr20	49807828	49897242
SLC9A8_chr20_49807828_49897242	0/0	t0033	4402	1	1	0	0	0	0	copy fasta	SLC9A8	chr20	49807828	49897242
SLC9A8_chr20_49807828_49897242	0/0	t0034	4402	1	0	0	0	0	1	copy fasta	SLC9A8	chr20	49807828	49897242
SLC9A8_chr20_49807828_49897242	0/0	t0035	4402	1	1	0	0	0	0	copy fasta	SLC9A8	chr20	49807828	49897242
SLC9A8_chr20_49807828_49897242	0/0	t0036	4402	1	0	1	0	0	0	copy fasta	SLC9A8	chr20	49807828	49897242
SLC9A8_chr20_49807828_49897242	0/0	t0037	4402	1	1	0	0	0	0	copy fasta	SLC9A8	chr20	49807828	49897242
SLC9A8_chr20_49807828_49897242	0/0	t0038	4402	1	1	0	0	0	0	copy fasta	SLC9A8	chr20	49807828	49897242
SLC9A8_chr20_49807828_49897242	0/0	t0039	4402	1	0	1	0	0	0	copy fasta	SLC9A8	chr20	49807828	49897242
SLC9A8_chr20_49807828_49897242	0/0	t0040	4402	1	0	0	1	0	0	copy fasta	SLC9A8	chr20	49807828	49897242
SLC9A9_chr3_143260222_143853468	0/1	t0001	1627	22	11	7	2	0	1	copy fasta	SLC9A9	chr3	143260222	143853468
SLC9A9_chr3_143260222_143853468	0/0	t0002	1627	21	2	7	9	0	3	copy fasta	SLC9A9	chr3	143260222	143853468
SLC9A9_chr3_143260222_143853468	0/0	t0003	1627	17	6	0	8	0	3	copy fasta	SLC9A9	chr3	143260222	143853468
SLC9A9_chr3_143260222_143853468	0/0	t0004	1627	7	4	2	0	0	1	copy fasta	SLC9A9	chr3	143260222	143853468
SLC9A9_chr3_143260222_143853468	0/0	t0005	1627	4	4	0	0	0	0	copy fasta	SLC9A9	chr3	143260222	143853468
SLC9A9_chr3_143260222_143853468	1/0	t0006	1627	4	3	0	0	0	0	copy fasta	SLC9A9	chr3	143260222	143853468
SLC9A9_chr3_143260222_143853468	0/0	t0007	1627	3	2	1	0	0	0	copy fasta	SLC9A9	chr3	143260222	143853468
SLC9A9_chr3_143260222_143853468	0/0	t0008	1627	3	3	0	0	0	0	copy fasta	SLC9A9	chr3	143260222	143853468
SLC9A9_chr3_143260222_143853468	0/0	t0009	1627	3	3	0	0	0	0	copy fasta	SLC9A9	chr3	143260222	143853468
SLC9A9_chr3_143260222_143853468	0/0	t0010	1627	3	1	1	0	0	1	copy fasta	SLC9A9	chr3	143260222	143853468
SLC9A9_chr3_143260222_143853468	0/0	t0011	1627	3	0	1	1	0	1	copy fasta	SLC9A9	chr3	143260222	143853468
SLC9A9_chr3_143260222_143853468	0/0	t0012	1627	3	3	0	0	0	0	copy fasta	SLC9A9	chr3	143260222	143853468
SLC9A9_chr3_143260222_143853468	0/0	t0013	1627	2	2	0	0	0	0	copy fasta	SLC9A9	chr3	143260222	143853468
SLC9A9_chr3_143260222_143853468	0/0	t0014	1627	2	2	0	0	0	0	copy fasta	SLC9A9	chr3	143260222	143853468