JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC9A9_chr3_143260222_143853468	0/0	t0015	1627	2	2	0	0	0	0	copy fasta	SLC9A9	chr3	143260222	143853468
SLC9A9_chr3_143260222_143853468	0/0	t0016	1627	1	1	0	0	0	0	copy fasta	SLC9A9	chr3	143260222	143853468
SLC9A9_chr3_143260222_143853468	0/0	t0017	1627	1	1	0	0	0	0	copy fasta	SLC9A9	chr3	143260222	143853468
SLC9A9_chr3_143260222_143853468	0/0	t0018	1627	1	0	1	0	0	0	copy fasta	SLC9A9	chr3	143260222	143853468
SLC9A9_chr3_143260222_143853468	0/0	t0019	1627	1	1	0	0	0	0	copy fasta	SLC9A9	chr3	143260222	143853468
SLC9A9_chr3_143260222_143853468	0/0	t0020	1627	1	1	0	0	0	0	copy fasta	SLC9A9	chr3	143260222	143853468
SLC9A9_chr3_143260222_143853468	0/0	t0021	1627	1	1	0	0	0	0	copy fasta	SLC9A9	chr3	143260222	143853468
SLC9A9_chr3_143260222_143853468	0/0	t0022	1627	1	1	0	0	0	0	copy fasta	SLC9A9	chr3	143260222	143853468
SLC9A9_chr3_143260222_143853468	0/0	t0023	1627	1	1	0	0	0	0	copy fasta	SLC9A9	chr3	143260222	143853468
SLC9A9_chr3_143260222_143853468	0/0	t0024	1627	1	1	0	0	0	0	copy fasta	SLC9A9	chr3	143260222	143853468
SLC9B1_chr4_102895928_103024705	1/1	t0001	297	315	82	52	133	12	34	copy fasta	SLC9B1	chr4	102895928	103024705
SLC9B1_chr4_102895928_103024705	0/0	t0002	297	3	0	0	3	0	0	copy fasta	SLC9B1	chr4	102895928	103024705
SLC9B2_chr4_103017253_103081761	0/0	t0001	4738	110	37	18	43	3	9	copy fasta	SLC9B2	chr4	103017253	103081761
SLC9B2_chr4_103017253_103081761	1/0	t0002	4738	100	17	14	49	1	18	copy fasta	SLC9B2	chr4	103017253	103081761
SLC9B2_chr4_103017253_103081761	0/1	t0003	4738	58	23	13	18	1	2	copy fasta	SLC9B2	chr4	103017253	103081761
SLC9B2_chr4_103017253_103081761	0/0	t0004	4738	39	0	10	25	0	4	copy fasta	SLC9B2	chr4	103017253	103081761
SLC9B2_chr4_103017253_103081761	0/0	t0005	4738	13	2	5	0	5	1	copy fasta	SLC9B2	chr4	103017253	103081761
SLC9B2_chr4_103017253_103081761	0/0	t0006	4738	11	0	0	10	0	1	copy fasta	SLC9B2	chr4	103017253	103081761
SLC9B2_chr4_103017253_103081761	0/0	t0007	4738	3	1	0	0	2	0	copy fasta	SLC9B2	chr4	103017253	103081761
SLC9B2_chr4_103017253_103081761	0/0	t0008	4738	2	0	2	0	0	0	copy fasta	SLC9B2	chr4	103017253	103081761
SLC9B2_chr4_103017253_103081761	0/0	t0009	4738	2	0	1	1	0	0	copy fasta	SLC9B2	chr4	103017253	103081761
SLC9B2_chr4_103017253_103081761	0/0	t0010	4738	1	0	0	1	0	0	copy fasta	SLC9B2	chr4	103017253	103081761
SLC9B2_chr4_103017253_103081761	0/0	t0011	4738	1	1	0	0	0	0	copy fasta	SLC9B2	chr4	103017253	103081761
SLC9B2_chr4_103017253_103081761	0/0	t0012	4738	1	1	0	0	0	0	copy fasta	SLC9B2	chr4	103017253	103081761
SLC9B2_chr4_103017253_103081761	0/0	t0013	4738	1	0	1	0	0	0	copy fasta	SLC9B2	chr4	103017253	103081761
SLC9B2_chr4_103017253_103081761	0/0	t0014	4738	1	1	0	0	0	0	copy fasta	SLC9B2	chr4	103017253	103081761
SLC9B2_chr4_103017253_103081761	0/0	t0015	4738	1	0	0	1	0	0	copy fasta	SLC9B2	chr4	103017253	103081761
SLC9B2_chr4_103017253_103081761	0/0	t0016	4738	1	1	0	0	0	0	copy fasta	SLC9B2	chr4	103017253	103081761
SLC9B2_chr4_103017253_103081761	0/0	t0017	4738	1	1	0	0	0	0	copy fasta	SLC9B2	chr4	103017253	103081761
SLC9B2_chr4_103017253_103081761	0/0	t0018	4738	1	1	0	0	0	0	copy fasta	SLC9B2	chr4	103017253	103081761
SLC9B2_chr4_103017253_103081761	0/0	t0019	4738	1	0	0	1	0	0	copy fasta	SLC9B2	chr4	103017253	103081761
SLC9B2_chr4_103017253_103081761	0/0	t0020	4738	1	1	0	0	0	0	copy fasta	SLC9B2	chr4	103017253	103081761
SLC9B2_chr4_103017253_103081761	0/0	t0021	4738	1	1	0	0	0	0	copy fasta	SLC9B2	chr4	103017253	103081761
SLC9B2_chr4_103017253_103081761	0/0	t0022	4738	1	1	0	0	0	0	copy fasta	SLC9B2	chr4	103017253	103081761
SLC9B2_chr4_103017253_103081761	0/0	t0023	4738	1	0	0	1	0	0	copy fasta	SLC9B2	chr4	103017253	103081761
SLC9B2_chr4_103017253_103081761	0/0	t0024	4738	1	0	0	1	0	0	copy fasta	SLC9B2	chr4	103017253	103081761
SLC9B2_chr4_103017253_103081761	0/0	t0025	4738	1	0	0	1	0	0	copy fasta	SLC9B2	chr4	103017253	103081761
SLC9B2_chr4_103017253_103081761	0/0	t0026	4738	1	0	0	0	0	1	copy fasta	SLC9B2	chr4	103017253	103081761
SLC9B2_chr4_103017253_103081761	0/0	t0027	4738	1	1	0	0	0	0	copy fasta	SLC9B2	chr4	103017253	103081761
SLC9C1_chr3_112135898_112299216	1/1	t0001	586	288	74	65	106	16	25	copy fasta	SLC9C1	chr3	112135898	112299216
SLC9C1_chr3_112135898_112299216	0/0	t0002	586	67	7	9	41	2	8	copy fasta	SLC9C1	chr3	112135898	112299216
SLC9C1_chr3_112135898_112299216	0/0	t0003	586	6	6	0	0	0	0	copy fasta	SLC9C1	chr3	112135898	112299216
SLC9C1_chr3_112135898_112299216	0/0	t0004	586	4	0	0	2	0	2	copy fasta	SLC9C1	chr3	112135898	112299216
SLC9C1_chr3_112135898_112299216	0/0	t0005	586	3	3	0	0	0	0	copy fasta	SLC9C1	chr3	112135898	112299216
SLC9C1_chr3_112135898_112299216	0/0	t0006	586	1	0	0	0	0	1	copy fasta	SLC9C1	chr3	112135898	112299216
SLC9C1_chr3_112135898_112299216	0/0	t0007	586	1	0	0	0	0	1	copy fasta	SLC9C1	chr3	112135898	112299216
SLC9C1_chr3_112135898_112299216	0/0	t0008	586	1	0	0	0	0	1	copy fasta	SLC9C1	chr3	112135898	112299216
SLC9C1_chr3_112135898_112299216	0/0	t0009	586	1	0	0	1	0	0	copy fasta	SLC9C1	chr3	112135898	112299216
SLC9C2_chr1_173495460_173608072	1/0	t0001	1036	199	44	50	68	10	26	copy fasta	SLC9C2	chr1	173495460	173608072
SLC9C2_chr1_173495460_173608072	0/1	t0002	1036	105	29	12	56	4	3	copy fasta	SLC9C2	chr1	173495460	173608072