JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC9C2_chr1_173495460_173608072	0/0	t0003	1036	11	11	0	0	0	0	copy fasta	SLC9C2	chr1	173495460	173608072
SLC9C2_chr1_173495460_173608072	0/0	t0004	1036	1	0	0	0	0	1	copy fasta	SLC9C2	chr1	173495460	173608072
SLCO1A2_chr12_21259600_21339917	0/1	t0001	5102	139	26	29	68	4	11	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	t0002	5094	62	0	2	54	0	6	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	t0003	5094	11	9	2	0	0	0	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	t0004	5103	10	0	5	0	4	1	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	t0005	5103	7	7	0	0	0	0	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	t0006	5103	7	0	3	0	1	3	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	t0007	5103	6	4	2	0	0	0	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	t0008	5103	6	6	0	0	0	0	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	t0009	5102	4	4	0	0	0	0	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	t0010	5094	3	3	0	0	0	0	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	t0011	5103	3	3	0	0	0	0	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	t0012	5103	3	3	0	0	0	0	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	t0013	5103	3	3	0	0	0	0	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	t0014	5103	2	2	0	0	0	0	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	t0015	5103	2	2	0	0	0	0	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	t0016	5103	2	0	0	0	0	2	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	t0017	5103	2	1	1	0	0	0	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	t0018	5102	2	0	0	2	0	0	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	t0019	5093	2	1	1	0	0	0	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	t0020	5102	2	2	0	0	0	0	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	t0021	5102	2	0	2	0	0	0	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	t0022	5102	2	0	0	2	0	0	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	t0023	5094	1	0	0	1	0	0	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	t0024	5094	1	1	0	0	0	0	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	t0025	5094	1	1	0	0	0	0	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	t0026	5094	1	1	0	0	0	0	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	t0027	5094	1	0	1	0	0	0	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	t0028	5094	1	0	1	0	0	0	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	t0029	5094	1	0	0	1	0	0	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	t0030	5094	1	1	0	0	0	0	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	t0031	5103	1	1	0	0	0	0	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	t0032	5103	1	1	0	0	0	0	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	t0033	5103	1	1	0	0	0	0	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	t0034	5103	1	0	1	0	0	0	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	t0035	5103	1	0	0	0	0	1	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	t0036	5103	1	0	0	1	0	0	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	t0037	5103	1	0	0	0	0	1	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	t0038	5103	1	1	0	0	0	0	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	t0039	5102	1	1	0	0	0	0	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	t0040	5102	1	1	0	0	0	0	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	t0041	5102	1	0	0	0	1	0	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	t0042	5102	1	0	0	1	0	0	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	t0043	5102	1	1	0	0	0	0	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	t0044	5102	1	0	0	1	0	0	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	t0045	5102	1	1	0	0	0	0	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	1/0	t0046	5102	1	0	0	0	0	0	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	t0047	5102	1	0	0	1	0	0	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	t0048	5102	1	0	0	1	0	0	copy fasta	SLCO1A2	chr12	21259600	21339917