JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLCO1A2_chr12_21259600_21339917	0/0	t0049	5102	1	0	0	0	0	1	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1A2_chr12_21259600_21339917	0/0	t0050	5102	1	0	0	1	0	0	copy fasta	SLCO1A2	chr12	21259600	21339917
SLCO1B1_chr12_21126194_21244796	1/0	t0001	712	129	52	25	31	6	14	copy fasta	SLCO1B1	chr12	21126194	21244796
SLCO1B1_chr12_21126194_21244796	0/1	t0002	712	114	27	17	66	0	3	copy fasta	SLCO1B1	chr12	21126194	21244796
SLCO1B1_chr12_21126194_21244796	0/0	t0003	712	51	0	2	46	0	3	copy fasta	SLCO1B1	chr12	21126194	21244796
SLCO1B1_chr12_21126194_21244796	0/0	t0004	712	10	0	2	0	2	6	copy fasta	SLCO1B1	chr12	21126194	21244796
SLCO1B1_chr12_21126194_21244796	0/0	t0005	712	5	0	0	5	0	0	copy fasta	SLCO1B1	chr12	21126194	21244796
SLCO1B1_chr12_21126194_21244796	0/0	t0006	712	3	3	0	0	0	0	copy fasta	SLCO1B1	chr12	21126194	21244796
SLCO1B1_chr12_21126194_21244796	0/0	t0007	712	3	0	0	3	0	0	copy fasta	SLCO1B1	chr12	21126194	21244796
SLCO1B1_chr12_21126194_21244796	0/0	t0008	712	1	1	0	0	0	0	copy fasta	SLCO1B1	chr12	21126194	21244796
SLCO1B1_chr12_21126194_21244796	0/0	t0009	712	1	1	0	0	0	0	copy fasta	SLCO1B1	chr12	21126194	21244796
SLCO1B1_chr12_21126194_21244796	0/0	t0010	712	1	0	0	1	0	0	copy fasta	SLCO1B1	chr12	21126194	21244796
SLCO1B3_chr12_20805705_20921911	0/1	t0001	905	131	36	25	55	4	10	copy fasta	SLCO1B3	chr12	20805705	20921911
SLCO1B3_chr12_20805705_20921911	0/0	t0002	906	54	19	10	23	0	2	copy fasta	SLCO1B3	chr12	20805705	20921911
SLCO1B3_chr12_20805705_20921911	0/0	t0003	884	38	5	9	15	2	7	copy fasta	SLCO1B3	chr12	20805705	20921911
SLCO1B3_chr12_20805705_20921911	1/0	t0004	905	28	21	1	1	0	4	copy fasta	SLCO1B3	chr12	20805705	20921911
SLCO1B3_chr12_20805705_20921911	0/0	t0005	883	16	1	5	10	0	0	copy fasta	SLCO1B3	chr12	20805705	20921911
SLCO1B3_chr12_20805705_20921911	0/0	t0006	906	6	3	0	0	0	3	copy fasta	SLCO1B3	chr12	20805705	20921911
SLCO1B3_chr12_20805705_20921911	0/0	t0007	905	4	0	0	4	0	0	copy fasta	SLCO1B3	chr12	20805705	20921911
SLCO1B3_chr12_20805705_20921911	0/0	t0008	883	2	2	0	0	0	0	copy fasta	SLCO1B3	chr12	20805705	20921911
SLCO1B3_chr12_20805705_20921911	0/0	t0009	883	2	0	0	2	0	0	copy fasta	SLCO1B3	chr12	20805705	20921911
SLCO1B3_chr12_20805705_20921911	0/0	t0010	906	1	1	0	0	0	0	copy fasta	SLCO1B3	chr12	20805705	20921911
SLCO1B3_chr12_20805705_20921911	0/0	t0011	883	1	0	0	1	0	0	copy fasta	SLCO1B3	chr12	20805705	20921911
SLCO1B3_chr12_20805705_20921911	0/0	t0012	906	1	0	0	1	0	0	copy fasta	SLCO1B3	chr12	20805705	20921911
SLCO1C1_chr12_20690332_20758386	1/0	t0001	1360	124	49	24	34	2	14	copy fasta	SLCO1C1	chr12	20690332	20758386
SLCO1C1_chr12_20690332_20758386	0/1	t0002	1360	121	19	31	47	7	16	copy fasta	SLCO1C1	chr12	20690332	20758386
SLCO1C1_chr12_20690332_20758386	0/0	t0003	1360	24	11	2	11	0	0	copy fasta	SLCO1C1	chr12	20690332	20758386
SLCO1C1_chr12_20690332_20758386	0/0	t0004	1360	10	1	5	0	1	3	copy fasta	SLCO1C1	chr12	20690332	20758386
SLCO1C1_chr12_20690332_20758386	0/0	t0005	1360	5	5	0	0	0	0	copy fasta	SLCO1C1	chr12	20690332	20758386
SLCO1C1_chr12_20690332_20758386	0/0	t0006	1360	3	0	0	0	0	3	copy fasta	SLCO1C1	chr12	20690332	20758386
SLCO1C1_chr12_20690332_20758386	0/0	t0007	1360	2	2	0	0	0	0	copy fasta	SLCO1C1	chr12	20690332	20758386
SLCO1C1_chr12_20690332_20758386	0/0	t0008	1360	2	0	0	2	0	0	copy fasta	SLCO1C1	chr12	20690332	20758386
SLCO1C1_chr12_20690332_20758386	0/0	t0009	1360	1	1	0	0	0	0	copy fasta	SLCO1C1	chr12	20690332	20758386
SLCO1C1_chr12_20690332_20758386	0/0	t0010	1360	1	1	0	0	0	0	copy fasta	SLCO1C1	chr12	20690332	20758386
SLCO1C1_chr12_20690332_20758386	0/0	t0011	1360	1	0	0	1	0	0	copy fasta	SLCO1C1	chr12	20690332	20758386
SLCO1C1_chr12_20690332_20758386	0/0	t0012	1360	1	1	0	0	0	0	copy fasta	SLCO1C1	chr12	20690332	20758386
SLCO1C1_chr12_20690332_20758386	0/0	t0013	1360	1	0	0	1	0	0	copy fasta	SLCO1C1	chr12	20690332	20758386
SLCO2A1_chr3_133927701_134034925	0/0	t0001	2136	83	15	11	39	5	13	copy fasta	SLCO2A1	chr3	133927701	134034925
SLCO2A1_chr3_133927701_134034925	0/1	t0002	2136	59	7	13	28	2	8	copy fasta	SLCO2A1	chr3	133927701	134034925
SLCO2A1_chr3_133927701_134034925	1/0	t0003	2136	57	13	14	22	1	6	copy fasta	SLCO2A1	chr3	133927701	134034925
SLCO2A1_chr3_133927701_134034925	0/0	t0004	2136	55	14	9	25	2	5	copy fasta	SLCO2A1	chr3	133927701	134034925
SLCO2A1_chr3_133927701_134034925	0/0	t0005	2136	10	8	2	0	0	0	copy fasta	SLCO2A1	chr3	133927701	134034925
SLCO2A1_chr3_133927701_134034925	0/0	t0006	2136	10	1	0	9	0	0	copy fasta	SLCO2A1	chr3	133927701	134034925
SLCO2A1_chr3_133927701_134034925	0/0	t0007	2136	9	1	0	8	0	0	copy fasta	SLCO2A1	chr3	133927701	134034925
SLCO2A1_chr3_133927701_134034925	0/0	t0008	2136	7	1	1	5	0	0	copy fasta	SLCO2A1	chr3	133927701	134034925
SLCO2A1_chr3_133927701_134034925	0/0	t0009	2134	6	5	1	0	0	0	copy fasta	SLCO2A1	chr3	133927701	134034925
SLCO2A1_chr3_133927701_134034925	0/0	t0010	2136	6	2	1	2	0	1	copy fasta	SLCO2A1	chr3	133927701	134034925
SLCO2A1_chr3_133927701_134034925	0/0	t0011	2136	5	4	0	1	0	0	copy fasta	SLCO2A1	chr3	133927701	134034925
SLCO2A1_chr3_133927701_134034925	0/0	t0012	2136	4	3	1	0	0	0	copy fasta	SLCO2A1	chr3	133927701	134034925
SLCO2A1_chr3_133927701_134034925	0/0	t0013	2136	3	3	0	0	0	0	copy fasta	SLCO2A1	chr3	133927701	134034925