JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLCO2A1_chr3_133927701_134034925	0/0	t0014	2136	3	0	1	1	0	1	copy fasta	SLCO2A1	chr3	133927701	134034925
SLCO2A1_chr3_133927701_134034925	0/0	t0015	2136	3	0	0	3	0	0	copy fasta	SLCO2A1	chr3	133927701	134034925
SLCO2A1_chr3_133927701_134034925	0/0	t0016	2134	3	3	0	0	0	0	copy fasta	SLCO2A1	chr3	133927701	134034925
SLCO2A1_chr3_133927701_134034925	0/0	t0017	2136	2	0	0	2	0	0	copy fasta	SLCO2A1	chr3	133927701	134034925
SLCO2A1_chr3_133927701_134034925	0/0	t0018	2136	2	0	0	2	0	0	copy fasta	SLCO2A1	chr3	133927701	134034925
SLCO2A1_chr3_133927701_134034925	0/0	t0019	2136	2	0	1	0	0	1	copy fasta	SLCO2A1	chr3	133927701	134034925
SLCO2A1_chr3_133927701_134034925	0/0	t0020	2136	1	0	0	1	0	0	copy fasta	SLCO2A1	chr3	133927701	134034925
SLCO2A1_chr3_133927701_134034925	0/0	t0021	2136	1	0	0	0	0	1	copy fasta	SLCO2A1	chr3	133927701	134034925
SLCO2A1_chr3_133927701_134034925	0/0	t0022	2136	1	0	0	1	0	0	copy fasta	SLCO2A1	chr3	133927701	134034925
SLCO2A1_chr3_133927701_134034925	0/0	t0023	2136	1	0	0	1	0	0	copy fasta	SLCO2A1	chr3	133927701	134034925
SLCO2A1_chr3_133927701_134034925	0/0	t0024	2136	1	1	0	0	0	0	copy fasta	SLCO2A1	chr3	133927701	134034925
SLCO2A1_chr3_133927701_134034925	0/0	t0025	2136	1	0	0	1	0	0	copy fasta	SLCO2A1	chr3	133927701	134034925
SLCO2A1_chr3_133927701_134034925	0/0	t0026	2136	1	1	0	0	0	0	copy fasta	SLCO2A1	chr3	133927701	134034925
SLCO2A1_chr3_133927701_134034925	0/0	t0027	2136	1	0	1	0	0	0	copy fasta	SLCO2A1	chr3	133927701	134034925
SLCO2A1_chr3_133927701_134034925	0/0	t0028	2134	1	1	0	0	0	0	copy fasta	SLCO2A1	chr3	133927701	134034925
SLCO2A1_chr3_133927701_134034925	0/0	t0029	2136	1	0	0	1	0	0	copy fasta	SLCO2A1	chr3	133927701	134034925
SLCO2A1_chr3_133927701_134034925	0/0	t0030	2136	1	0	0	1	0	0	copy fasta	SLCO2A1	chr3	133927701	134034925
SLCO2A1_chr3_133927701_134034925	0/0	t0031	2136	1	0	0	1	0	0	copy fasta	SLCO2A1	chr3	133927701	134034925
SLCO2A1_chr3_133927701_134034925	0/0	t0032	2136	1	1	0	0	0	0	copy fasta	SLCO2A1	chr3	133927701	134034925
SLCO2B1_chr11_75146107_75211549	0/0	t0001	2245	162	47	32	58	9	16	copy fasta	SLCO2B1	chr11	75146107	75211549
SLCO2B1_chr11_75146107_75211549	0/1	t0002	2245	91	8	22	23	7	30	copy fasta	SLCO2B1	chr11	75146107	75211549
SLCO2B1_chr11_75146107_75211549	0/0	t0003	2245	53	11	5	35	0	2	copy fasta	SLCO2B1	chr11	75146107	75211549
SLCO2B1_chr11_75146107_75211549	0/0	t0004	2245	31	20	1	10	0	0	copy fasta	SLCO2B1	chr11	75146107	75211549
SLCO2B1_chr11_75146107_75211549	0/0	t0005	2245	11	2	1	8	0	0	copy fasta	SLCO2B1	chr11	75146107	75211549
SLCO2B1_chr11_75146107_75211549	1/0	t0006	2245	8	0	0	6	0	1	copy fasta	SLCO2B1	chr11	75146107	75211549
SLCO2B1_chr11_75146107_75211549	0/0	t0007	2245	3	0	0	3	0	0	copy fasta	SLCO2B1	chr11	75146107	75211549
SLCO2B1_chr11_75146107_75211549	0/0	t0008	2245	3	3	0	0	0	0	copy fasta	SLCO2B1	chr11	75146107	75211549
SLCO2B1_chr11_75146107_75211549	0/0	t0009	2245	1	1	0	0	0	0	copy fasta	SLCO2B1	chr11	75146107	75211549
SLCO2B1_chr11_75146107_75211549	0/0	t0010	2245	1	0	0	0	0	1	copy fasta	SLCO2B1	chr11	75146107	75211549
SLCO2B1_chr11_75146107_75211549	0/0	t0011	2245	1	1	0	0	0	0	copy fasta	SLCO2B1	chr11	75146107	75211549
SLCO2B1_chr11_75146107_75211549	0/0	t0012	2245	1	1	0	0	0	0	copy fasta	SLCO2B1	chr11	75146107	75211549
SLCO2B1_chr11_75146107_75211549	0/0	t0013	2245	1	0	0	1	0	0	copy fasta	SLCO2B1	chr11	75146107	75211549
SLCO2B1_chr11_75146107_75211549	0/0	t0014	2245	1	0	0	1	0	0	copy fasta	SLCO2B1	chr11	75146107	75211549
SLCO2B1_chr11_75146107_75211549	0/0	t0015	2245	1	0	0	1	0	0	copy fasta	SLCO2B1	chr11	75146107	75211549
SLCO2B1_chr11_75146107_75211549	0/0	t0016	2245	1	0	1	0	0	0	copy fasta	SLCO2B1	chr11	75146107	75211549
SLCO2B1_chr11_75146107_75211549	0/0	t0017	2245	1	1	0	0	0	0	copy fasta	SLCO2B1	chr11	75146107	75211549
SLCO2B1_chr11_75146107_75211549	0/0	t0018	2245	1	1	0	0	0	0	copy fasta	SLCO2B1	chr11	75146107	75211549
SLCO3A1_chr15_91848708_92170903	0/0	t0001	2975	34	8	17	3	2	4	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	t0002	2970	30	2	7	12	3	6	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	t0003	2971	22	7	9	3	0	3	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	t0004	2968	8	0	0	7	0	1	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	t0005	2970	8	0	0	8	0	0	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	t0006	2975	6	1	2	0	2	1	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	t0007	2972	5	4	0	0	0	1	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	t0008	2975	4	4	0	0	0	0	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	t0009	2975	4	2	2	0	0	0	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	t0010	2965	3	3	0	0	0	0	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	t0011	2976	3	2	1	0	0	0	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	t0012	2967	3	3	0	0	0	0	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	t0013	2972	3	1	2	0	0	0	copy fasta	SLCO3A1	chr15	91848708	92170903