JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLCO3A1_chr15_91848708_92170903	0/0	t0014	2971	3	3	0	0	0	0	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/1	t0015	2970	3	0	1	0	0	1	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	t0016	2971	2	0	0	2	0	0	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	t0017	2974	2	2	0	0	0	0	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	t0018	2968	2	1	1	0	0	0	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	t0019	2974	2	2	0	0	0	0	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	t0020	2969	2	0	1	0	0	1	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	t0021	2963	2	0	0	2	0	0	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	t0022	2969	1	1	0	0	0	0	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	t0023	2975	1	1	0	0	0	0	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	t0024	2975	1	1	0	0	0	0	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	t0025	2973	1	0	1	0	0	0	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	t0026	2975	1	0	0	1	0	0	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	t0027	2975	1	1	0	0	0	0	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	t0028	2967	1	1	0	0	0	0	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	t0029	2970	1	1	0	0	0	0	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	t0030	2970	1	0	1	0	0	0	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	t0031	2968	1	0	0	1	0	0	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	t0032	2970	1	0	0	0	0	1	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	t0033	2966	1	1	0	0	0	0	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	t0034	2973	1	1	0	0	0	0	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	t0035	2969	1	1	0	0	0	0	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	1/0	t0036	2970	1	0	0	0	0	0	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	t0037	2968	1	1	0	0	0	0	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	t0038	2972	1	1	0	0	0	0	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	t0039	2972	1	1	0	0	0	0	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	t0040	2971	1	0	1	0	0	0	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	t0041	2972	1	0	0	0	0	1	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	t0042	2972	1	1	0	0	0	0	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	t0043	2965	1	1	0	0	0	0	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	t0044	2967	1	0	0	0	0	1	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	t0045	2966	1	1	0	0	0	0	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	t0046	2964	1	1	0	0	0	0	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	t0047	2966	1	1	0	0	0	0	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	t0048	2966	1	0	0	0	0	1	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	t0049	2976	1	1	0	0	0	0	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	t0050	2975	1	1	0	0	0	0	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	t0051	2975	1	0	1	0	0	0	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	t0052	2965	1	1	0	0	0	0	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	t0053	2974	1	1	0	0	0	0	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	t0054	2974	1	0	0	0	1	0	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	t0055	2968	1	0	0	1	0	0	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	t0056	2967	1	1	0	0	0	0	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	t0057	2968	1	1	0	0	0	0	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	t0058	2973	1	1	0	0	0	0	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	t0059	2973	1	1	0	0	0	0	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO3A1_chr15_91848708_92170903	0/0	t0060	2969	1	0	1	0	0	0	copy fasta	SLCO3A1	chr15	91848708	92170903
SLCO4A1_chr20_62637503_62677293	0/0	t0001	548	119	60	21	27	5	6	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	t0002	548	117	0	18	78	1	20	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	t0003	548	112	15	21	58	4	14	copy fasta	SLCO4A1	chr20	62637503	62677293