JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLCO4A1_chr20_62637503_62677293	0/0	t0004	548	33	2	11	17	0	3	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	1/0	t0005	548	10	6	3	0	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	t0006	548	5	5	0	0	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	t0007	548	4	0	0	0	2	2	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	t0008	548	3	0	0	3	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	t0009	548	3	0	0	3	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	t0010	548	2	2	0	0	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	t0011	548	2	1	1	0	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	t0012	548	2	2	0	0	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	t0013	548	2	0	1	0	0	1	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	t0014	548	1	0	0	1	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	t0015	548	1	0	0	0	1	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	t0016	548	1	0	0	1	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	t0017	548	1	1	0	0	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	t0018	548	1	0	1	0	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	t0019	548	1	0	0	0	1	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	t0020	548	1	0	1	0	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	t0021	548	1	0	0	1	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/1	t0022	548	1	0	0	0	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	t0023	548	1	1	0	0	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	t0024	548	1	0	0	1	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	t0025	548	1	1	0	0	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	t0026	548	1	1	0	0	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	t0027	548	1	0	1	0	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	t0028	548	1	1	0	0	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	t0029	548	1	0	0	1	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	t0030	548	1	0	1	0	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4A1_chr20_62637503_62677293	0/0	t0031	548	1	0	0	1	0	0	copy fasta	SLCO4A1	chr20	62637503	62677293
SLCO4C1_chr5_102228986_102301284	1/1	t0001	2895	116	13	24	60	4	13	copy fasta	SLCO4C1	chr5	102228986	102301284
SLCO4C1_chr5_102228986_102301284	0/0	t0002	2887	69	2	13	40	4	10	copy fasta	SLCO4C1	chr5	102228986	102301284
SLCO4C1_chr5_102228986_102301284	0/0	t0003	2891	68	16	10	32	2	8	copy fasta	SLCO4C1	chr5	102228986	102301284
SLCO4C1_chr5_102228986_102301284	0/0	t0004	2891	23	3	1	16	0	3	copy fasta	SLCO4C1	chr5	102228986	102301284
SLCO4C1_chr5_102228986_102301284	0/0	t0005	2891	13	12	0	0	0	1	copy fasta	SLCO4C1	chr5	102228986	102301284
SLCO4C1_chr5_102228986_102301284	0/0	t0006	2889	9	4	4	1	0	0	copy fasta	SLCO4C1	chr5	102228986	102301284
SLCO4C1_chr5_102228986_102301284	0/0	t0007	2891	9	9	0	0	0	0	copy fasta	SLCO4C1	chr5	102228986	102301284
SLCO4C1_chr5_102228986_102301284	0/0	t0008	2891	4	2	2	0	0	0	copy fasta	SLCO4C1	chr5	102228986	102301284
SLCO4C1_chr5_102228986_102301284	0/0	t0009	2897	4	4	0	0	0	0	copy fasta	SLCO4C1	chr5	102228986	102301284
SLCO4C1_chr5_102228986_102301284	0/0	t0010	2889	3	3	0	0	0	0	copy fasta	SLCO4C1	chr5	102228986	102301284
SLCO4C1_chr5_102228986_102301284	0/0	t0011	2893	3	3	0	0	0	0	copy fasta	SLCO4C1	chr5	102228986	102301284
SLCO4C1_chr5_102228986_102301284	0/0	t0012	2889	3	2	1	0	0	0	copy fasta	SLCO4C1	chr5	102228986	102301284
SLCO4C1_chr5_102228986_102301284	0/0	t0013	2887	3	0	0	3	0	0	copy fasta	SLCO4C1	chr5	102228986	102301284
SLCO4C1_chr5_102228986_102301284	0/0	t0014	2885	3	3	0	0	0	0	copy fasta	SLCO4C1	chr5	102228986	102301284
SLCO4C1_chr5_102228986_102301284	0/0	t0015	2897	2	0	0	2	0	0	copy fasta	SLCO4C1	chr5	102228986	102301284
SLCO4C1_chr5_102228986_102301284	0/0	t0016	2891	2	1	1	0	0	0	copy fasta	SLCO4C1	chr5	102228986	102301284
SLCO4C1_chr5_102228986_102301284	0/0	t0017	2893	2	0	0	0	0	2	copy fasta	SLCO4C1	chr5	102228986	102301284
SLCO4C1_chr5_102228986_102301284	0/0	t0018	2891	1	1	0	0	0	0	copy fasta	SLCO4C1	chr5	102228986	102301284
SLCO4C1_chr5_102228986_102301284	0/0	t0019	2887	1	1	0	0	0	0	copy fasta	SLCO4C1	chr5	102228986	102301284
SLCO4C1_chr5_102228986_102301284	0/0	t0020	2897	1	0	0	1	0	0	copy fasta	SLCO4C1	chr5	102228986	102301284
SLCO4C1_chr5_102228986_102301284	0/0	t0021	2891	1	1	0	0	0	0	copy fasta	SLCO4C1	chr5	102228986	102301284
SLCO4C1_chr5_102228986_102301284	0/0	t0022	2891	1	0	0	0	0	1	copy fasta	SLCO4C1	chr5	102228986	102301284