JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLCO4C1_chr5_102228986_102301284	0/0	t0023	2891	1	1	0	0	0	0	copy fasta	SLCO4C1	chr5	102228986	102301284
SLCO4C1_chr5_102228986_102301284	0/0	t0024	2895	1	0	0	1	0	0	copy fasta	SLCO4C1	chr5	102228986	102301284
SLCO4C1_chr5_102228986_102301284	0/0	t0025	2895	1	0	1	0	0	0	copy fasta	SLCO4C1	chr5	102228986	102301284
SLCO4C1_chr5_102228986_102301284	0/0	t0026	2889	1	0	0	0	0	1	copy fasta	SLCO4C1	chr5	102228986	102301284
SLCO4C1_chr5_102228986_102301284	0/0	t0027	2895	1	0	0	1	0	0	copy fasta	SLCO4C1	chr5	102228986	102301284
SLCO4C1_chr5_102228986_102301284	0/0	t0028	2889	1	1	0	0	0	0	copy fasta	SLCO4C1	chr5	102228986	102301284
SLCO4C1_chr5_102228986_102301284	0/0	t0029	2887	1	0	0	1	0	0	copy fasta	SLCO4C1	chr5	102228986	102301284
SLCO4C1_chr5_102228986_102301284	0/0	t0030	2887	1	1	0	0	0	0	copy fasta	SLCO4C1	chr5	102228986	102301284
SLCO4C1_chr5_102228986_102301284	0/0	t0031	2887	1	0	0	0	0	1	copy fasta	SLCO4C1	chr5	102228986	102301284
SLCO4C1_chr5_102228986_102301284	0/0	t0032	2893	1	1	0	0	0	0	copy fasta	SLCO4C1	chr5	102228986	102301284
SLCO4C1_chr5_102228986_102301284	0/0	t0033	2885	1	1	0	0	0	0	copy fasta	SLCO4C1	chr5	102228986	102301284
SLCO4C1_chr5_102228986_102301284	0/0	t0034	2891	1	0	1	0	0	0	copy fasta	SLCO4C1	chr5	102228986	102301284
SLCO4C1_chr5_102228986_102301284	0/0	t0035	2891	1	1	0	0	0	0	copy fasta	SLCO4C1	chr5	102228986	102301284
SLCO5A1_chr8_69662046_69839978	0/0	t0001	6444	45	5	12	18	0	10	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0002	6444	22	5	5	9	2	1	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0003	6447	18	2	4	11	0	1	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0004	6444	13	6	0	4	2	1	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0005	6449	11	0	4	7	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0006	6447	11	1	1	9	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0007	6444	9	1	2	4	0	2	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0008	6445	8	0	2	3	1	2	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	1/0	t0009	6445	7	4	2	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0010	6449	7	1	1	5	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0011	6446	6	0	0	3	0	3	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0012	6444	5	1	2	1	0	1	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0013	6444	4	4	0	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0014	6449	3	0	0	2	0	1	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0015	6446	3	3	0	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0016	6445	3	3	0	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0017	6444	3	0	1	2	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0018	6449	3	3	0	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0019	6447	2	0	1	0	1	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0020	6444	2	2	0	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0021	6444	2	0	0	2	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0022	6447	2	0	0	0	1	1	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0023	6444	2	0	2	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0024	6449	2	0	0	2	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0025	6447	2	0	0	2	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0026	6447	2	0	2	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0027	6444	2	0	1	0	0	1	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0028	6445	2	2	0	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0029	6444	2	0	0	2	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0030	6447	2	0	1	1	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0031	6445	1	0	1	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0032	6444	1	0	0	1	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0033	6447	1	0	0	1	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0034	6444	1	0	0	0	0	1	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0035	6444	1	1	0	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0036	6444	1	1	0	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0037	6447	1	0	0	1	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978