JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLCO5A1_chr8_69662046_69839978	0/0	t0038	6448	1	1	0	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0039	6449	1	1	0	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0040	6444	1	1	0	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0041	6444	1	1	0	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0042	6444	1	0	0	1	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0043	6449	1	0	0	1	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/1	t0044	6444	1	0	0	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0045	6444	1	0	0	0	1	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0046	6445	1	0	0	0	0	1	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0047	6444	1	0	1	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0048	6447	1	0	0	1	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0049	6447	1	0	1	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0050	6447	1	1	0	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0051	6447	1	0	1	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0052	6444	1	0	1	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0053	6444	1	0	0	1	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0054	6444	1	1	0	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0055	6449	1	1	0	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0056	6445	1	0	1	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0057	6444	1	1	0	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0058	6449	1	1	0	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0059	6447	1	0	0	1	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0060	6447	1	0	0	1	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0061	6449	1	0	0	1	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0062	6444	1	0	0	1	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0063	6446	1	0	0	0	0	1	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0064	6445	1	1	0	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0065	6444	1	0	0	0	0	1	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0066	6444	1	1	0	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0067	6444	1	0	1	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0068	6444	1	0	1	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0069	6445	1	0	0	0	0	1	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0070	6444	1	0	1	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0071	6444	1	1	0	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0072	6449	1	0	0	1	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0073	6449	1	0	0	1	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0074	6446	1	1	0	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0075	6449	1	0	0	0	0	1	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0076	6448	1	0	0	0	0	1	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0077	6444	1	0	1	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0078	6449	1	0	0	1	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0079	6444	1	1	0	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0080	6444	1	1	0	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0081	6445	1	1	0	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0082	6449	1	0	0	1	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0083	6444	1	0	1	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0084	6447	1	0	0	0	0	1	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0085	6444	1	1	0	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0086	6449	1	1	0	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0087	6444	1	1	0	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978