JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLCO5A1_chr8_69662046_69839978	0/0	t0088	6447	1	1	0	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0089	6447	1	0	1	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0090	6449	1	1	0	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0091	6444	1	1	0	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0092	6445	1	1	0	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0093	6445	1	1	0	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0094	6447	1	1	0	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0095	6445	1	1	0	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0096	6444	1	1	0	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0097	6444	1	1	0	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0098	6449	1	1	0	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0099	6446	1	1	0	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0100	6446	1	1	0	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0101	6445	1	1	0	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0102	6449	1	1	0	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0103	6445	1	1	0	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0104	6449	1	1	0	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO5A1_chr8_69662046_69839978	0/0	t0105	6445	1	0	1	0	0	0	copy fasta	SLCO5A1	chr8	69662046	69839978
SLCO6A1_chr5_102366774_102504001	1/1	t0001	523	228	69	37	87	9	24	copy fasta	SLCO6A1	chr5	102366774	102504001
SLCO6A1_chr5_102366774_102504001	0/0	t0002	523	87	2	14	52	4	15	copy fasta	SLCO6A1	chr5	102366774	102504001
SLCO6A1_chr5_102366774_102504001	0/0	t0003	523	23	10	8	3	1	1	copy fasta	SLCO6A1	chr5	102366774	102504001
SLCO6A1_chr5_102366774_102504001	0/0	t0004	523	2	2	0	0	0	0	copy fasta	SLCO6A1	chr5	102366774	102504001
SLCO6A1_chr5_102366774_102504001	0/0	t0005	523	1	0	1	0	0	0	copy fasta	SLCO6A1	chr5	102366774	102504001
SLCO6A1_chr5_102366774_102504001	0/0	t0006	523	1	1	0	0	0	0	copy fasta	SLCO6A1	chr5	102366774	102504001
SLF1_chr5_94613669_94702621	0/1	t0001	2407	111	19	15	59	2	15	copy fasta	SLF1	chr5	94613669	94702621
SLF1_chr5_94613669_94702621	0/0	t0002	2407	71	12	8	46	1	4	copy fasta	SLF1	chr5	94613669	94702621
SLF1_chr5_94613669_94702621	0/0	t0003	2403	53	26	11	6	3	7	copy fasta	SLF1	chr5	94613669	94702621
SLF1_chr5_94613669_94702621	0/0	t0004	2407	53	3	1	46	0	3	copy fasta	SLF1	chr5	94613669	94702621
SLF1_chr5_94613669_94702621	0/0	t0005	2407	24	3	5	10	1	5	copy fasta	SLF1	chr5	94613669	94702621
SLF1_chr5_94613669_94702621	1/0	t0006	2407	13	0	6	1	3	2	copy fasta	SLF1	chr5	94613669	94702621
SLF1_chr5_94613669_94702621	0/0	t0007	2407	8	8	0	0	0	0	copy fasta	SLF1	chr5	94613669	94702621
SLF1_chr5_94613669_94702621	0/0	t0008	2407	4	0	2	0	2	0	copy fasta	SLF1	chr5	94613669	94702621
SLF1_chr5_94613669_94702621	0/0	t0009	2407	3	0	3	0	0	0	copy fasta	SLF1	chr5	94613669	94702621
SLF1_chr5_94613669_94702621	0/0	t0010	2407	3	3	0	0	0	0	copy fasta	SLF1	chr5	94613669	94702621
SLF1_chr5_94613669_94702621	0/0	t0011	2407	2	0	0	0	0	2	copy fasta	SLF1	chr5	94613669	94702621
SLF1_chr5_94613669_94702621	0/0	t0012	2407	2	2	0	0	0	0	copy fasta	SLF1	chr5	94613669	94702621
SLF1_chr5_94613669_94702621	0/0	t0013	2407	2	0	0	2	0	0	copy fasta	SLF1	chr5	94613669	94702621
SLF1_chr5_94613669_94702621	0/0	t0014	2407	2	0	2	0	0	0	copy fasta	SLF1	chr5	94613669	94702621
SLF1_chr5_94613669_94702621	0/0	t0015	2407	2	2	0	0	0	0	copy fasta	SLF1	chr5	94613669	94702621
SLF1_chr5_94613669_94702621	0/0	t0016	2407	2	2	0	0	0	0	copy fasta	SLF1	chr5	94613669	94702621
SLF1_chr5_94613669_94702621	0/0	t0017	2407	1	0	0	1	0	0	copy fasta	SLF1	chr5	94613669	94702621
SLF1_chr5_94613669_94702621	0/0	t0018	2407	1	0	1	0	0	0	copy fasta	SLF1	chr5	94613669	94702621
SLF1_chr5_94613669_94702621	0/0	t0019	2407	1	1	0	0	0	0	copy fasta	SLF1	chr5	94613669	94702621
SLF1_chr5_94613669_94702621	0/0	t0020	2407	1	0	0	1	0	0	copy fasta	SLF1	chr5	94613669	94702621
SLF1_chr5_94613669_94702621	0/0	t0021	2407	1	0	0	1	0	0	copy fasta	SLF1	chr5	94613669	94702621
SLF1_chr5_94613669_94702621	0/0	t0022	2407	1	0	0	1	0	0	copy fasta	SLF1	chr5	94613669	94702621
SLF1_chr5_94613669_94702621	0/0	t0023	2407	1	0	0	0	0	1	copy fasta	SLF1	chr5	94613669	94702621
SLF1_chr5_94613669_94702621	0/0	t0024	2407	1	0	0	0	0	1	copy fasta	SLF1	chr5	94613669	94702621
SLF1_chr5_94613669_94702621	0/0	t0025	2407	1	1	0	0	0	0	copy fasta	SLF1	chr5	94613669	94702621
SLF2_chr10_100907963_100970134	1/1	t0001	3371	135	20	38	56	3	16	copy fasta	SLF2	chr10	100907963	100970134