JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLF2_chr10_100907963_100970134	0/0	t0002	3371	89	27	9	43	3	7	copy fasta	SLF2	chr10	100907963	100970134
SLF2_chr10_100907963_100970134	0/0	t0003	3371	19	13	4	0	1	1	copy fasta	SLF2	chr10	100907963	100970134
SLF2_chr10_100907963_100970134	0/0	t0004	3371	15	2	3	1	3	6	copy fasta	SLF2	chr10	100907963	100970134
SLF2_chr10_100907963_100970134	0/0	t0005	3370	13	1	2	7	2	1	copy fasta	SLF2	chr10	100907963	100970134
SLF2_chr10_100907963_100970134	0/0	t0006	3370	9	2	0	7	0	0	copy fasta	SLF2	chr10	100907963	100970134
SLF2_chr10_100907963_100970134	0/0	t0007	3373	4	0	0	4	0	0	copy fasta	SLF2	chr10	100907963	100970134
SLF2_chr10_100907963_100970134	0/0	t0008	3371	4	3	0	0	0	1	copy fasta	SLF2	chr10	100907963	100970134
SLF2_chr10_100907963_100970134	0/0	t0009	3369	4	4	0	0	0	0	copy fasta	SLF2	chr10	100907963	100970134
SLF2_chr10_100907963_100970134	0/0	t0010	3371	4	4	0	0	0	0	copy fasta	SLF2	chr10	100907963	100970134
SLF2_chr10_100907963_100970134	0/0	t0011	3371	2	0	0	0	0	2	copy fasta	SLF2	chr10	100907963	100970134
SLF2_chr10_100907963_100970134	0/0	t0012	3371	2	2	0	0	0	0	copy fasta	SLF2	chr10	100907963	100970134
SLF2_chr10_100907963_100970134	0/0	t0013	3367	2	1	1	0	0	0	copy fasta	SLF2	chr10	100907963	100970134
SLF2_chr10_100907963_100970134	0/0	t0014	3369	2	0	1	0	1	0	copy fasta	SLF2	chr10	100907963	100970134
SLF2_chr10_100907963_100970134	0/0	t0015	3373	2	1	1	0	0	0	copy fasta	SLF2	chr10	100907963	100970134
SLF2_chr10_100907963_100970134	0/0	t0016	3373	2	2	0	0	0	0	copy fasta	SLF2	chr10	100907963	100970134
SLF2_chr10_100907963_100970134	0/0	t0017	3371	1	0	0	1	0	0	copy fasta	SLF2	chr10	100907963	100970134
SLF2_chr10_100907963_100970134	0/0	t0018	3373	1	0	1	0	0	0	copy fasta	SLF2	chr10	100907963	100970134
SLF2_chr10_100907963_100970134	0/0	t0019	3371	1	0	0	1	0	0	copy fasta	SLF2	chr10	100907963	100970134
SLF2_chr10_100907963_100970134	0/0	t0020	3371	1	0	1	0	0	0	copy fasta	SLF2	chr10	100907963	100970134
SLF2_chr10_100907963_100970134	0/0	t0021	3371	1	1	0	0	0	0	copy fasta	SLF2	chr10	100907963	100970134
SLF2_chr10_100907963_100970134	0/0	t0022	3369	1	1	0	0	0	0	copy fasta	SLF2	chr10	100907963	100970134
SLF2_chr10_100907963_100970134	0/0	t0023	3370	1	0	0	0	0	1	copy fasta	SLF2	chr10	100907963	100970134
SLF2_chr10_100907963_100970134	0/0	t0024	3370	1	0	1	0	0	0	copy fasta	SLF2	chr10	100907963	100970134
SLF2_chr10_100907963_100970134	0/0	t0025	3368	1	0	0	0	1	0	copy fasta	SLF2	chr10	100907963	100970134
SLF2_chr10_100907963_100970134	0/0	t0026	3373	1	1	0	0	0	0	copy fasta	SLF2	chr10	100907963	100970134
SLF2_chr10_100907963_100970134	0/0	t0027	3371	1	1	0	0	0	0	copy fasta	SLF2	chr10	100907963	100970134
SLF2_chr10_100907963_100970134	0/0	t0028	3371	1	0	0	1	0	0	copy fasta	SLF2	chr10	100907963	100970134
SLF2_chr10_100907963_100970134	0/0	t0029	3371	1	1	0	0	0	0	copy fasta	SLF2	chr10	100907963	100970134
SLF2_chr10_100907963_100970134	0/0	t0030	3371	1	1	0	0	0	0	copy fasta	SLF2	chr10	100907963	100970134
SLF2_chr10_100907963_100970134	0/0	t0031	3372	1	0	0	1	0	0	copy fasta	SLF2	chr10	100907963	100970134
SLF2_chr10_100907963_100970134	0/0	t0032	3373	1	1	0	0	0	0	copy fasta	SLF2	chr10	100907963	100970134
SLF2_chr10_100907963_100970134	0/0	t0033	3375	1	0	0	0	0	1	copy fasta	SLF2	chr10	100907963	100970134
SLF2_chr10_100907963_100970134	0/0	t0034	3371	1	1	0	0	0	0	copy fasta	SLF2	chr10	100907963	100970134
SLF2_chr10_100907963_100970134	0/0	t0035	3369	1	1	0	0	0	0	copy fasta	SLF2	chr10	100907963	100970134
SLF2_chr10_100907963_100970134	0/0	t0036	3371	1	0	0	1	0	0	copy fasta	SLF2	chr10	100907963	100970134
SLF2_chr10_100907963_100970134	0/0	t0037	3371	1	1	0	0	0	0	copy fasta	SLF2	chr10	100907963	100970134
SLF2_chr10_100907963_100970134	0/0	t0038	3371	1	0	0	1	0	0	copy fasta	SLF2	chr10	100907963	100970134
SLFN11_chr17_35345305_35378621	0/0	t0001	2435	179	22	32	93	10	22	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/1	t0002	2435	99	6	34	41	5	12	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	t0003	2435	52	20	4	22	0	6	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	t0004	2435	39	0	0	36	0	3	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	t0005	2435	14	5	1	8	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	t0006	2435	12	0	0	12	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	t0007	2435	11	11	0	0	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	t0008	2435	7	7	0	0	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	t0009	2436	7	7	0	0	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	t0010	2436	6	0	1	0	1	4	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	t0011	2435	6	0	1	4	0	1	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	t0012	2435	5	5	0	0	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	1/0	t0013	2434	4	3	0	0	0	0	copy fasta	SLFN11	chr17	35345305	35378621