JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLIT1_chr10_96993038_97190959	0/0	t0021	3360	1	0	1	0	0	0	copy fasta	SLIT1	chr10	96993038	97190959
SLIT1_chr10_96993038_97190959	0/0	t0022	3360	1	0	1	0	0	0	copy fasta	SLIT1	chr10	96993038	97190959
SLIT1_chr10_96993038_97190959	0/0	t0023	3360	1	1	0	0	0	0	copy fasta	SLIT1	chr10	96993038	97190959
SLIT1_chr10_96993038_97190959	0/0	t0024	3360	1	1	0	0	0	0	copy fasta	SLIT1	chr10	96993038	97190959
SLIT1_chr10_96993038_97190959	0/0	t0025	3364	1	1	0	0	0	0	copy fasta	SLIT1	chr10	96993038	97190959
SLIT1_chr10_96993038_97190959	0/0	t0026	3360	1	1	0	0	0	0	copy fasta	SLIT1	chr10	96993038	97190959
SLIT1_chr10_96993038_97190959	0/0	t0027	3360	1	0	1	0	0	0	copy fasta	SLIT1	chr10	96993038	97190959
SLIT1_chr10_96993038_97190959	0/0	t0028	3360	1	1	0	0	0	0	copy fasta	SLIT1	chr10	96993038	97190959
SLIT1_chr10_96993038_97190959	0/0	t0029	3360	1	0	0	1	0	0	copy fasta	SLIT1	chr10	96993038	97190959
SLIT2_chr4_20246905_20625561	0/0	t0001	3464	35	5	15	11	2	2	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0002	3463	22	5	3	9	2	3	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/1	t0003	3463	10	1	6	1	0	1	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0004	3464	10	2	5	0	2	1	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0005	3464	9	0	3	4	0	2	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0006	3462	8	1	6	0	0	1	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0007	3464	8	4	1	3	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0008	3464	7	0	1	3	1	2	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0009	3464	7	0	2	3	1	1	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0010	3462	6	2	3	0	0	1	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0011	3463	5	2	1	0	2	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0012	3464	5	0	1	0	0	4	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0013	3464	4	3	0	1	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0014	3464	3	0	1	2	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0015	3463	3	0	0	2	0	1	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0016	3465	3	1	2	0	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0017	3463	3	1	1	0	0	1	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	1/0	t0018	3464	3	0	2	0	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0019	3463	3	1	0	2	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0020	3464	2	1	0	1	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0021	3462	2	2	0	0	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0022	3463	2	2	0	0	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0023	3464	2	2	0	0	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0024	3463	2	2	0	0	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0025	3463	2	2	0	0	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0026	3463	2	2	0	0	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0027	3464	2	1	1	0	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0028	3464	2	2	0	0	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0029	3462	2	2	0	0	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0030	3464	2	2	0	0	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0031	3455	2	0	0	2	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0032	3462	2	0	2	0	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0033	3464	2	2	0	0	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0034	3463	1	0	0	1	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0035	3463	1	1	0	0	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0036	3462	1	0	0	0	0	1	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0037	3463	1	0	0	0	0	1	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0038	3465	1	0	0	0	0	1	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0039	3463	1	0	0	0	0	1	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0040	3463	1	0	0	0	0	1	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0041	3464	1	0	0	0	0	1	copy fasta	SLIT2	chr4	20246905	20625561