JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLIT2_chr4_20246905_20625561	0/0	t0042	3464	1	1	0	0	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0043	3465	1	0	0	0	0	1	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0044	3464	1	0	0	1	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0045	3464	1	0	0	1	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0046	3463	1	0	1	0	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0047	3464	1	0	0	1	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0048	3464	1	0	0	1	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0049	3464	1	0	0	1	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0050	3464	1	0	1	0	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0051	3462	1	1	0	0	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0052	3463	1	1	0	0	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0053	3464	1	1	0	0	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0054	3463	1	1	0	0	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0055	3463	1	1	0	0	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0056	3465	1	0	1	0	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0057	3462	1	1	0	0	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0058	3464	1	1	0	0	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0059	3465	1	1	0	0	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0060	3463	1	1	0	0	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0061	3463	1	1	0	0	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0062	3464	1	1	0	0	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0063	3464	1	0	0	0	0	1	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0064	3463	1	0	1	0	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0065	3462	1	1	0	0	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0066	3463	1	1	0	0	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0067	3465	1	0	0	1	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0068	3464	1	0	0	1	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0069	3464	1	1	0	0	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0070	3463	1	1	0	0	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0071	3463	1	0	0	1	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0072	3464	1	0	0	0	0	1	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0073	3464	1	0	0	0	0	1	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0074	3454	1	0	0	1	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0075	3535	1	1	0	0	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0076	3465	1	0	0	0	0	1	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0077	3463	1	0	0	1	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0078	3464	1	0	0	1	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0079	3462	1	1	0	0	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0080	3463	1	1	0	0	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	t0081	3464	1	0	0	0	0	1	copy fasta	SLIT2	chr4	20246905	20625561
SLIT3_chr5_168656740_169306139	0/0	t0001	5144	29	15	6	3	0	5	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	t0002	5144	13	1	3	7	0	2	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	t0003	5144	12	5	2	4	1	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	t0004	5132	7	2	1	4	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	t0005	5144	7	7	0	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	t0006	5144	6	6	0	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	t0007	5132	5	1	2	2	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	t0008	5132	4	0	3	0	1	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	t0009	5144	4	1	0	3	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	t0010	5144	4	3	1	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139