JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLIT3_chr5_168656740_169306139	0/0	t0011	5132	3	2	1	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	t0012	5144	3	2	1	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	t0013	5145	3	0	1	1	0	1	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	t0014	5144	2	2	0	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	t0015	5145	2	0	0	2	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	t0016	5144	2	2	0	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	t0017	5076	2	2	0	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	t0018	5144	2	2	0	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	t0019	5144	2	2	0	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	t0020	5132	2	1	0	0	0	1	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	t0021	5076	1	1	0	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	t0022	5089	1	0	0	1	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	t0023	5144	1	1	0	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	t0024	5144	1	1	0	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	t0025	5144	1	0	0	0	0	1	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	t0026	5144	1	0	0	1	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	t0027	5144	1	0	1	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	t0028	5144	1	0	1	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	t0029	5144	1	1	0	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	t0030	5132	1	0	0	1	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	t0031	5132	1	0	0	1	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	t0032	5132	1	0	0	1	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	t0033	5144	1	1	0	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	t0034	5144	1	1	0	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	t0035	5144	1	0	0	1	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	t0036	5144	1	0	0	1	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	t0037	5145	1	0	0	1	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	t0038	5132	1	0	1	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLITRK1_chr13_83872205_83887474	1/1	t0001	2737	148	11	30	80	6	19	copy fasta	SLITRK1	chr13	83872205	83887474
SLITRK1_chr13_83872205_83887474	0/0	t0002	2736	96	5	11	64	3	13	copy fasta	SLITRK1	chr13	83872205	83887474
SLITRK1_chr13_83872205_83887474	0/0	t0003	2736	62	40	4	16	0	2	copy fasta	SLITRK1	chr13	83872205	83887474
SLITRK1_chr13_83872205_83887474	0/0	t0004	2736	20	0	8	12	0	0	copy fasta	SLITRK1	chr13	83872205	83887474
SLITRK1_chr13_83872205_83887474	0/0	t0005	2736	19	14	5	0	0	0	copy fasta	SLITRK1	chr13	83872205	83887474
SLITRK1_chr13_83872205_83887474	0/0	t0006	2736	7	2	3	0	0	2	copy fasta	SLITRK1	chr13	83872205	83887474
SLITRK1_chr13_83872205_83887474	0/0	t0007	2737	6	0	0	6	0	0	copy fasta	SLITRK1	chr13	83872205	83887474
SLITRK1_chr13_83872205_83887474	0/0	t0008	2736	5	0	0	5	0	0	copy fasta	SLITRK1	chr13	83872205	83887474
SLITRK1_chr13_83872205_83887474	0/0	t0009	2737	4	0	0	4	0	0	copy fasta	SLITRK1	chr13	83872205	83887474
SLITRK1_chr13_83872205_83887474	0/0	t0010	2737	3	3	0	0	0	0	copy fasta	SLITRK1	chr13	83872205	83887474
SLITRK1_chr13_83872205_83887474	0/0	t0011	2736	3	3	0	0	0	0	copy fasta	SLITRK1	chr13	83872205	83887474
SLITRK1_chr13_83872205_83887474	0/0	t0012	2737	2	2	0	0	0	0	copy fasta	SLITRK1	chr13	83872205	83887474
SLITRK1_chr13_83872205_83887474	0/0	t0013	2738	2	0	0	2	0	0	copy fasta	SLITRK1	chr13	83872205	83887474
SLITRK1_chr13_83872205_83887474	0/0	t0014	2737	2	0	0	0	0	2	copy fasta	SLITRK1	chr13	83872205	83887474
SLITRK1_chr13_83872205_83887474	0/0	t0015	2736	2	0	0	2	0	0	copy fasta	SLITRK1	chr13	83872205	83887474
SLITRK1_chr13_83872205_83887474	0/0	t0016	2736	2	1	0	0	1	0	copy fasta	SLITRK1	chr13	83872205	83887474
SLITRK1_chr13_83872205_83887474	0/0	t0017	2736	2	2	0	0	0	0	copy fasta	SLITRK1	chr13	83872205	83887474
SLITRK1_chr13_83872205_83887474	0/0	t0018	2737	2	0	2	0	0	0	copy fasta	SLITRK1	chr13	83872205	83887474
SLITRK1_chr13_83872205_83887474	0/0	t0019	2736	2	0	1	0	1	0	copy fasta	SLITRK1	chr13	83872205	83887474
SLITRK1_chr13_83872205_83887474	0/0	t0020	2736	2	2	0	0	0	0	copy fasta	SLITRK1	chr13	83872205	83887474
SLITRK1_chr13_83872205_83887474	0/0	t0021	2736	2	2	0	0	0	0	copy fasta	SLITRK1	chr13	83872205	83887474
SLITRK1_chr13_83872205_83887474	0/0	t0022	2736	2	0	0	2	0	0	copy fasta	SLITRK1	chr13	83872205	83887474