Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BDH1_chr3_197504783_197560968	0/0	t0203	2500	1	0	0	1	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0204	2497	1	0	0	0	0	1	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0205	2496	1	0	0	1	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0206	2517	1	0	0	0	0	1	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0207	2513	1	0	0	1	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0208	2511	1	0	0	1	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0209	2509	1	0	0	1	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0210	2503	1	1	0	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0211	2504	1	0	0	0	0	1	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0212	2501	1	0	0	1	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0213	2500	1	0	0	1	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0214	2498	1	0	0	0	0	1	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0215	2497	1	0	0	0	1	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0216	2495	1	0	0	1	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0217	2494	1	0	0	1	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0218	2493	1	0	0	0	0	1	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0219	2494	1	0	0	0	0	1	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0220	2483	1	0	0	1	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0221	2480	1	0	1	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0222	2505	1	0	1	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0223	2497	1	0	0	1	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0224	2496	1	0	0	0	0	1	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0225	2494	1	0	0	0	0	1	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0226	2489	1	1	0	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0227	2486	1	0	1	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0228	2498	1	0	1	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0229	2485	1	0	0	0	0	1	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0230	2475	1	1	0	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0231	2442	1	1	0	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0232	2477	1	1	0	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0233	2469	1	1	0	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0234	2491	1	0	1	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	t0235	2493	1	0	1	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH2_chr4_103072592_103104834	1/1	t0001	2183	153	30	24	66	7	24	copy fasta	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	t0002	2183	121	35	19	60	2	5	copy fasta	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	t0003	2183	50	5	15	21	1	8	copy fasta	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	t0004	2183	13	0	0	11	0	2	copy fasta	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	t0005	2183	10	0	2	4	0	4	copy fasta	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	t0006	2183	8	7	1	0	0	0	copy fasta	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	t0007	2183	3	3	0	0	0	0	copy fasta	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	t0008	2183	3	0	0	3	0	0	copy fasta	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	t0009	2183	2	0	0	2	0	0	copy fasta	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	t0010	2183	2	2	0	0	0	0	copy fasta	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	t0011	2183	2	2	0	0	0	0	copy fasta	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	t0012	2183	2	2	0	0	0	0	copy fasta	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	t0013	2183	2	0	0	1	0	1	copy fasta	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	t0014	2183	1	0	1	0	0	0	copy fasta	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	t0015	2183	1	0	0	1	0	0	copy fasta	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	t0016	2183	1	0	0	1	0	0	copy fasta	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	t0017	2183	1	1	0	0	0	0	copy fasta	BDH2	chr4	103072592	103104834