JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLITRK1_chr13_83872205_83887474	0/0	t0023	2736	1	0	0	1	0	0	copy fasta	SLITRK1	chr13	83872205	83887474
SLITRK1_chr13_83872205_83887474	0/0	t0024	2737	1	1	0	0	0	0	copy fasta	SLITRK1	chr13	83872205	83887474
SLITRK1_chr13_83872205_83887474	0/0	t0025	2737	1	0	0	0	1	0	copy fasta	SLITRK1	chr13	83872205	83887474
SLITRK1_chr13_83872205_83887474	0/0	t0026	2736	1	0	0	1	0	0	copy fasta	SLITRK1	chr13	83872205	83887474
SLITRK1_chr13_83872205_83887474	0/0	t0027	2736	1	1	0	0	0	0	copy fasta	SLITRK1	chr13	83872205	83887474
SLITRK1_chr13_83872205_83887474	0/0	t0028	2737	1	0	0	1	0	0	copy fasta	SLITRK1	chr13	83872205	83887474
SLITRK1_chr13_83872205_83887474	0/0	t0029	2737	1	0	0	1	0	0	copy fasta	SLITRK1	chr13	83872205	83887474
SLITRK1_chr13_83872205_83887474	0/0	t0030	2736	1	1	0	0	0	0	copy fasta	SLITRK1	chr13	83872205	83887474
SLITRK1_chr13_83872205_83887474	0/0	t0031	2736	1	0	0	1	0	0	copy fasta	SLITRK1	chr13	83872205	83887474
SLITRK2_chrX_145812829_145834856	0/1	t0001	5881	116	19	26	48	8	14	copy fasta	SLITRK2	chrX	145812829	145834856
SLITRK2_chrX_145812829_145834856	0/0	t0002	5881	56	11	5	26	1	13	copy fasta	SLITRK2	chrX	145812829	145834856
SLITRK2_chrX_145812829_145834856	0/0	t0003	5885	51	5	7	37	0	2	copy fasta	SLITRK2	chrX	145812829	145834856
SLITRK2_chrX_145812829_145834856	0/0	t0004	5881	8	6	1	0	1	0	copy fasta	SLITRK2	chrX	145812829	145834856
SLITRK2_chrX_145812829_145834856	0/0	t0005	5881	6	0	0	6	0	0	copy fasta	SLITRK2	chrX	145812829	145834856
SLITRK2_chrX_145812829_145834856	0/0	t0006	5880	6	0	4	2	0	0	copy fasta	SLITRK2	chrX	145812829	145834856
SLITRK2_chrX_145812829_145834856	0/0	t0007	5882	6	0	0	6	0	0	copy fasta	SLITRK2	chrX	145812829	145834856
SLITRK2_chrX_145812829_145834856	0/0	t0008	5885	6	5	1	0	0	0	copy fasta	SLITRK2	chrX	145812829	145834856
SLITRK2_chrX_145812829_145834856	0/0	t0009	5882	4	3	0	1	0	0	copy fasta	SLITRK2	chrX	145812829	145834856
SLITRK2_chrX_145812829_145834856	1/0	t0010	5884	4	1	0	0	1	1	copy fasta	SLITRK2	chrX	145812829	145834856
SLITRK2_chrX_145812829_145834856	0/0	t0011	5884	4	3	1	0	0	0	copy fasta	SLITRK2	chrX	145812829	145834856
SLITRK2_chrX_145812829_145834856	0/0	t0012	5881	3	0	2	0	1	0	copy fasta	SLITRK2	chrX	145812829	145834856
SLITRK2_chrX_145812829_145834856	0/0	t0013	5881	3	0	0	3	0	0	copy fasta	SLITRK2	chrX	145812829	145834856
SLITRK2_chrX_145812829_145834856	0/0	t0014	5881	2	2	0	0	0	0	copy fasta	SLITRK2	chrX	145812829	145834856
SLITRK2_chrX_145812829_145834856	0/0	t0015	5880	2	0	0	2	0	0	copy fasta	SLITRK2	chrX	145812829	145834856
SLITRK2_chrX_145812829_145834856	0/0	t0016	5881	2	0	0	2	0	0	copy fasta	SLITRK2	chrX	145812829	145834856
SLITRK2_chrX_145812829_145834856	0/0	t0017	5881	2	0	0	2	0	0	copy fasta	SLITRK2	chrX	145812829	145834856
SLITRK2_chrX_145812829_145834856	0/0	t0018	5884	2	2	0	0	0	0	copy fasta	SLITRK2	chrX	145812829	145834856
SLITRK2_chrX_145812829_145834856	0/0	t0019	5885	2	1	1	0	0	0	copy fasta	SLITRK2	chrX	145812829	145834856
SLITRK2_chrX_145812829_145834856	0/0	t0020	5885	2	2	0	0	0	0	copy fasta	SLITRK2	chrX	145812829	145834856
SLITRK2_chrX_145812829_145834856	0/0	t0021	5885	2	1	0	0	0	1	copy fasta	SLITRK2	chrX	145812829	145834856
SLITRK2_chrX_145812829_145834856	0/0	t0022	5886	2	2	0	0	0	0	copy fasta	SLITRK2	chrX	145812829	145834856
SLITRK2_chrX_145812829_145834856	0/0	t0023	5884	2	2	0	0	0	0	copy fasta	SLITRK2	chrX	145812829	145834856
SLITRK2_chrX_145812829_145834856	0/0	t0024	5885	2	0	0	2	0	0	copy fasta	SLITRK2	chrX	145812829	145834856
SLITRK2_chrX_145812829_145834856	0/0	t0025	5881	1	0	0	1	0	0	copy fasta	SLITRK2	chrX	145812829	145834856
SLITRK2_chrX_145812829_145834856	0/0	t0026	5881	1	1	0	0	0	0	copy fasta	SLITRK2	chrX	145812829	145834856
SLITRK2_chrX_145812829_145834856	0/0	t0027	5880	1	1	0	0	0	0	copy fasta	SLITRK2	chrX	145812829	145834856
SLITRK2_chrX_145812829_145834856	0/0	t0028	5886	1	1	0	0	0	0	copy fasta	SLITRK2	chrX	145812829	145834856
SLITRK2_chrX_145812829_145834856	0/0	t0029	5887	1	0	0	1	0	0	copy fasta	SLITRK2	chrX	145812829	145834856
SLITRK2_chrX_145812829_145834856	0/0	t0030	5882	1	0	0	1	0	0	copy fasta	SLITRK2	chrX	145812829	145834856
SLITRK2_chrX_145812829_145834856	0/0	t0031	5881	1	0	0	1	0	0	copy fasta	SLITRK2	chrX	145812829	145834856
SLITRK2_chrX_145812829_145834856	0/0	t0032	5881	1	0	0	0	0	1	copy fasta	SLITRK2	chrX	145812829	145834856
SLITRK2_chrX_145812829_145834856	0/0	t0033	5880	1	0	0	1	0	0	copy fasta	SLITRK2	chrX	145812829	145834856
SLITRK2_chrX_145812829_145834856	0/0	t0034	5881	1	0	0	1	0	0	copy fasta	SLITRK2	chrX	145812829	145834856
SLITRK2_chrX_145812829_145834856	0/0	t0035	5881	1	0	0	0	1	0	copy fasta	SLITRK2	chrX	145812829	145834856
SLITRK2_chrX_145812829_145834856	0/0	t0036	5881	1	0	1	0	0	0	copy fasta	SLITRK2	chrX	145812829	145834856
SLITRK2_chrX_145812829_145834856	0/0	t0037	5882	1	0	0	0	0	1	copy fasta	SLITRK2	chrX	145812829	145834856
SLITRK2_chrX_145812829_145834856	0/0	t0038	5882	1	1	0	0	0	0	copy fasta	SLITRK2	chrX	145812829	145834856
SLITRK2_chrX_145812829_145834856	0/0	t0039	5883	1	1	0	0	0	0	copy fasta	SLITRK2	chrX	145812829	145834856
SLITRK2_chrX_145812829_145834856	0/0	t0040	5885	1	1	0	0	0	0	copy fasta	SLITRK2	chrX	145812829	145834856
SLITRK2_chrX_145812829_145834856	0/0	t0041	5885	1	0	1	0	0	0	copy fasta	SLITRK2	chrX	145812829	145834856