JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLITRK3_chr3_165181720_165201384	0/0	t0037	2003	1	0	1	0	0	0	copy fasta	SLITRK3	chr3	165181720	165201384
SLITRK3_chr3_165181720_165201384	0/0	t0038	2004	1	0	1	0	0	0	copy fasta	SLITRK3	chr3	165181720	165201384
SLITRK3_chr3_165181720_165201384	0/0	t0039	2004	1	0	0	0	1	0	copy fasta	SLITRK3	chr3	165181720	165201384
SLITRK3_chr3_165181720_165201384	0/0	t0040	2008	1	0	0	1	0	0	copy fasta	SLITRK3	chr3	165181720	165201384
SLITRK3_chr3_165181720_165201384	0/0	t0041	2004	1	1	0	0	0	0	copy fasta	SLITRK3	chr3	165181720	165201384
SLITRK3_chr3_165181720_165201384	0/0	t0042	2019	1	0	1	0	0	0	copy fasta	SLITRK3	chr3	165181720	165201384
SLITRK3_chr3_165181720_165201384	0/0	t0043	2017	1	0	1	0	0	0	copy fasta	SLITRK3	chr3	165181720	165201384
SLITRK3_chr3_165181720_165201384	0/0	t0044	2008	1	1	0	0	0	0	copy fasta	SLITRK3	chr3	165181720	165201384
SLITRK3_chr3_165181720_165201384	0/0	t0045	2002	1	0	0	1	0	0	copy fasta	SLITRK3	chr3	165181720	165201384
SLITRK3_chr3_165181720_165201384	0/0	t0046	2004	1	0	1	0	0	0	copy fasta	SLITRK3	chr3	165181720	165201384
SLITRK3_chr3_165181720_165201384	0/0	t0047	2010	1	1	0	0	0	0	copy fasta	SLITRK3	chr3	165181720	165201384
SLITRK3_chr3_165181720_165201384	0/0	t0048	2013	1	1	0	0	0	0	copy fasta	SLITRK3	chr3	165181720	165201384
SLITRK4_chrX_143617790_143641101	0/0	t0001	6227	36	2	7	22	3	2	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	t0002	6228	31	2	6	15	1	7	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	t0003	6210	23	0	2	19	1	1	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	t0004	6224	13	11	2	0	0	0	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	t0005	6233	12	0	3	7	0	2	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	t0006	6227	10	0	0	9	1	0	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	1/0	t0007	6223	9	8	0	0	0	0	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	t0008	6232	9	0	1	7	0	1	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	t0009	6226	8	0	1	4	2	1	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	t0010	6225	7	7	0	0	0	0	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	t0011	6227	6	6	0	0	0	0	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	t0012	6226	6	6	0	0	0	0	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	t0013	6229	6	0	1	2	0	3	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	t0014	6232	6	0	3	0	1	2	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	t0015	6211	6	0	0	3	0	3	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	t0016	6228	5	0	0	5	0	0	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	t0017	6228	5	0	0	5	0	0	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	t0018	6216	4	0	1	3	0	0	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	t0019	6232	4	0	2	0	2	0	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	t0020	6227	4	0	0	4	0	0	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	t0021	6236	3	0	3	0	0	0	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	t0022	6225	3	3	0	0	0	0	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	t0023	6210	3	0	2	0	0	1	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	t0024	6237	3	0	1	1	0	1	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	t0025	6217	3	3	0	0	0	0	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	t0026	6235	2	0	0	2	0	0	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	t0027	6234	2	0	0	2	0	0	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	t0028	6233	2	0	0	2	0	0	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	t0029	6232	2	0	0	2	0	0	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	t0030	6227	2	2	0	0	0	0	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	t0031	6223	2	2	0	0	0	0	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	t0032	6231	2	0	0	2	0	0	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	t0033	6230	2	1	0	1	0	0	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	t0034	6228	2	1	1	0	0	0	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	t0035	6228	2	0	2	0	0	0	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	t0036	6235	2	0	2	0	0	0	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	t0037	6233	2	0	0	2	0	0	copy fasta	SLITRK4	chrX	143617790	143641101
SLITRK4_chrX_143617790_143641101	0/0	t0038	6211	2	2	0	0	0	0	copy fasta	SLITRK4	chrX	143617790	143641101